Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX84560 | Canola | nucleus | 96.74 | 96.74 |
| CDY43721 | Canola | nucleus | 80.16 | 83.1 |
| CDX75039 | Canola | nucleus | 85.87 | 82.08 |
| AT2G36400.1 | Thale cress | nucleus | 88.32 | 81.66 |
| CDX84126 | Canola | nucleus | 86.68 | 81.38 |
| CDX67545 | Canola | nucleus | 65.49 | 66.21 |
| CDX78132 | Canola | nucleus | 67.39 | 65.78 |
| CDX73595 | Canola | nucleus | 67.93 | 65.62 |
| CDY13333 | Canola | nucleus | 64.4 | 64.75 |
| CDX76249 | Canola | nucleus | 62.77 | 56.48 |
| KRH30830 | Soybean | nucleus | 47.28 | 51.94 |
| KRH67865 | Soybean | nucleus | 53.8 | 51.56 |
| KRG96154 | Soybean | nucleus | 54.35 | 51.55 |
| KRH32671 | Soybean | nucleus | 45.65 | 50.0 |
| Solyc09g009200.1.1 | Tomato | nucleus | 48.37 | 46.72 |
| VIT_08s0007g03760.t01 | Wine grape | nucleus | 52.17 | 46.38 |
| Solyc10g083510.1.1 | Tomato | nucleus | 47.55 | 44.99 |
| PGSC0003DMT400072628 | Potato | nucleus | 47.01 | 44.25 |
| CDY66284 | Canola | nucleus | 63.32 | 43.31 |
| GSMUA_Achr8P07650_001 | Banana | extracellular | 36.14 | 42.09 |
| GSMUA_Achr3P22790_001 | Banana | nucleus | 44.29 | 41.58 |
| CDY55116 | Canola | nucleus | 22.55 | 29.43 |
| CDY51791 | Canola | nucleus | 26.09 | 29.36 |
| CDY28823 | Canola | nucleus | 26.09 | 27.67 |
| CDY66422 | Canola | nucleus | 22.83 | 26.84 |
| CDY70432 | Canola | nucleus | 16.03 | 24.28 |
| CDY29584 | Canola | nucleus | 24.73 | 22.3 |
| CDX83200 | Canola | nucleus | 23.64 | 22.08 |
| CDY72447 | Canola | nucleus, plastid | 20.38 | 21.8 |
| CDX75672 | Canola | nucleus | 26.63 | 21.73 |
| CDX72654 | Canola | nucleus | 26.09 | 21.72 |
| CDX69322 | Canola | nucleus | 27.17 | 21.69 |
| CDY03485 | Canola | nucleus | 20.38 | 21.55 |
| CDY10989 | Canola | nucleus | 21.2 | 20.74 |
| CDX92617 | Canola | nucleus | 22.28 | 20.15 |
| CDX82503 | Canola | nucleus | 19.29 | 19.4 |
| CDY39081 | Canola | nucleus | 20.92 | 19.35 |
| CDX97531 | Canola | nucleus | 20.11 | 19.07 |
| CDY55209 | Canola | nucleus | 20.11 | 18.97 |
| CDX71979 | Canola | nucleus | 19.84 | 18.96 |
| CDX75742 | Canola | nucleus | 18.48 | 18.63 |
| CDY37044 | Canola | nucleus | 22.01 | 18.54 |
| CDY27382 | Canola | nucleus | 22.01 | 18.24 |
| CDY33407 | Canola | nucleus | 19.29 | 17.75 |
| CDY21475 | Canola | nucleus | 21.74 | 16.1 |
| CDX76250 | Canola | cytosol, golgi, mitochondrion, nucleus | 0.27 | 0.59 |
Protein Annotations
| MapMan:15.5.52.1 | GO:A0A078CUJ1 | EnsemblPlants:CDX79674 | ProteinID:CDX79674 | ProteinID:CDX79674.1 | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0032502 | InterPro:GRF | EnsemblPlantsGene:GSBRNA2T00132470001 | InterPro:Gln-Leu-Gln_QLQ |
| InterPro:IPR014977 | InterPro:IPR014978 | PFAM:PF08879 | PFAM:PF08880 | PFscan:PS51666 | PFscan:PS51667 |
| PANTHER:PTHR31602 | PANTHER:PTHR31602:SF39 | SMART:SM00951 | UniParc:UPI0004EE0A4F | InterPro:WRC_dom | SEG:seg |
Description
BnaC03g20100D
Coordinates
chrLK031818:-:1503185..1505862
Molecular Weight (calculated)
40516.0 Da
IEP (calculated)
9.011
GRAVY (calculated)
-0.711
Length
368 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLQLKQWRS QQVQTESEPQ PSAAKIPRHA FDPIQSQTAT STVLPLFAPE PASSKLSSLC PDSSSRFSKM GSFFSWAQWQ ELELQALIYR YMLAGAAVPQ
101: ELLLPIKKSL LHLSPSYFLQ HLPHYQPAWY LGRGAMDPEP GRCRRTDGKK WRCSRDVFAG HKYCERHVHR GRNRSRKPVE TPTVNATTTT SMAAPPTAAP
201: SSTPSAFAFG GGQEVGQRGS SSFFFSSQSC SEMKQERNNN KRPYESHNGF GSNGSDGGHI LRHFFDDWPR SEADNSSSPM SSATCLSISM PGNSSSDVSL
301: KLSTGNEEEA RSNNIGRDQQ NMSWWSGGGT NHNHHHMGGP LAEALRSSSS SSPTSVLHQL GVSTQAFH
101: ELLLPIKKSL LHLSPSYFLQ HLPHYQPAWY LGRGAMDPEP GRCRRTDGKK WRCSRDVFAG HKYCERHVHR GRNRSRKPVE TPTVNATTTT SMAAPPTAAP
201: SSTPSAFAFG GGQEVGQRGS SSFFFSSQSC SEMKQERNNN KRPYESHNGF GSNGSDGGHI LRHFFDDWPR SEADNSSSPM SSATCLSISM PGNSSSDVSL
301: KLSTGNEEEA RSNNIGRDQQ NMSWWSGGGT NHNHHHMGGP LAEALRSSSS SSPTSVLHQL GVSTQAFH
001: MDLQLKQWRS QQQQQHQTES EEQPSAAKIP KHVFDQIHSH TATSTALPLF TPEPTSSKLS SLSPDSSSRF PKMGSFFSWA QWQELELQAL IYRYMLAGAA
101: VPQELLLPIK KSLLHLSPSY FLHHPLQHLP HYQPAWYLGR AAMDPEPGRC RRTDGKKWRC SRDVFAGHKY CERHMHRGRN RSRKPVETPT TVNATATSMA
201: SSVAAAATTT TATTTSTFAF GGGGGSEEVV GQGGSFFFSG SSNSSSELLH LSQSCSEMKQ ESNNMNNKRP YESHIGFSNN RSDGGHILRP FFDDWPRSSL
301: QEADNSSSPM SSATCLSISM PGNSSSDVSL KLSTGNEEGA RSNNNGRDQQ NMSWWSGGGS NHHHHNMGGP LAEALRSSSS SSPTSVLHQL GVSTQAFH
101: VPQELLLPIK KSLLHLSPSY FLHHPLQHLP HYQPAWYLGR AAMDPEPGRC RRTDGKKWRC SRDVFAGHKY CERHMHRGRN RSRKPVETPT TVNATATSMA
201: SSVAAAATTT TATTTSTFAF GGGGGSEEVV GQGGSFFFSG SSNSSSELLH LSQSCSEMKQ ESNNMNNKRP YESHIGFSNN RSDGGHILRP FFDDWPRSSL
301: QEADNSSSPM SSATCLSISM PGNSSSDVSL KLSTGNEEGA RSNNNGRDQQ NMSWWSGGGS NHHHHNMGGP LAEALRSSSS SSPTSVLHQL GVSTQAFH
Arabidopsis Description
GRF3Growth-regulating factor 3 [Source:UniProtKB/Swiss-Prot;Acc:Q9SJR5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.