Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Solyc04g009820.2.1 | |
| Solyc11g006230.1.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G52910.1 | Solyc04g009820.2.1 | AT5G28640.1 | 15960617 |
| AT3G52910.1 | Solyc11g006230.1.1 | AT5G28640.1 | 15960617 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400072628 | Potato | nucleus | 93.32 | 92.84 |
| Solyc09g009200.1.1 | Tomato | nucleus | 58.61 | 59.84 |
| KRH30830 | Soybean | nucleus | 46.27 | 53.73 |
| KRH67865 | Soybean | nucleus | 52.19 | 52.86 |
| KRG96154 | Soybean | nucleus | 52.44 | 52.58 |
| VIT_08s0007g03760.t01 | Wine grape | nucleus | 55.53 | 52.17 |
| KRH32671 | Soybean | nucleus | 43.7 | 50.6 |
| CDX79674 | Canola | nucleus | 44.99 | 47.55 |
| CDX84560 | Canola | nucleus | 44.22 | 46.74 |
| AT2G36400.1 | Thale cress | nucleus | 47.56 | 46.48 |
| Bra023066.1-P | Field mustard | nucleus | 43.96 | 46.47 |
| CDX67545 | Canola | nucleus | 43.19 | 46.15 |
| CDX75039 | Canola | nucleus | 45.5 | 45.97 |
| CDY43721 | Canola | nucleus | 41.9 | 45.92 |
| Bra028541.1-P | Field mustard | nucleus | 42.93 | 45.63 |
| Bra005268.1-P | Field mustard | nucleus | 45.5 | 45.62 |
| CDX84126 | Canola | nucleus | 45.76 | 45.41 |
| Bra017240.1-P | Field mustard | nucleus | 42.16 | 45.3 |
| CDY13333 | Canola | nucleus | 42.42 | 45.08 |
| CDX78132 | Canola | nucleus | 42.93 | 44.3 |
| GSMUA_Achr3P22790_001 | Banana | nucleus | 44.22 | 43.88 |
| CDX73595 | Canola | nucleus | 42.93 | 43.83 |
| AT3G52910.1 | Thale cress | nucleus | 42.67 | 43.68 |
| Bra006956.1-P | Field mustard | nucleus | 42.67 | 43.46 |
| GSMUA_Achr8P07650_001 | Banana | extracellular | 34.19 | 42.09 |
| CDX76249 | Canola | nucleus | 39.85 | 37.9 |
| Solyc08g079800.2.1 | Tomato | nucleus | 16.2 | 28.9 |
| CDY66284 | Canola | nucleus | 39.85 | 28.81 |
| Bra019640.1-P | Field mustard | nucleus | 39.59 | 28.62 |
| Solyc08g068760.1.1 | Tomato | cytosol | 11.31 | 28.39 |
| Solyc08g005430.2.1 | Tomato | nucleus | 21.34 | 23.31 |
| Solyc07g041640.2.1 | Tomato | nucleus | 20.05 | 22.67 |
| Solyc12g096070.1.1 | Tomato | nucleus | 20.05 | 22.61 |
| Solyc08g075950.1.1 | Tomato | nucleus | 20.82 | 22.44 |
| Solyc01g091540.1.1 | Tomato | nucleus | 23.39 | 21.67 |
| Solyc04g077510.2.1 | Tomato | nucleus | 31.62 | 20.67 |
| Solyc08g083230.1.1 | Tomato | nucleus | 19.79 | 19.35 |
| Solyc02g092070.2.1 | Tomato | nucleus | 27.25 | 18.66 |
| Solyc03g082430.1.1 | Tomato | nucleus | 21.85 | 18.56 |
Protein Annotations
| MapMan:15.5.52.1 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0032502 | InterPro:GRF |
| InterPro:Gln-Leu-Gln_QLQ | InterPro:IPR014977 | InterPro:IPR014978 | UniProt:K4D3D8 | PFAM:PF08879 | PFAM:PF08880 |
| PFscan:PS51666 | PFscan:PS51667 | PANTHER:PTHR31602 | PANTHER:PTHR31602:SF12 | SMART:SM00951 | EnsemblPlantsGene:Solyc10g083510.1 |
| EnsemblPlants:Solyc10g083510.1.1 | UniParc:UPI0001AB3F4C | InterPro:WRC_dom | SEG:seg | : | : |
Description
No Description!
Coordinates
chr10:-:63298664..63302566
Molecular Weight (calculated)
42381.3 Da
IEP (calculated)
9.424
GRAVY (calculated)
-0.644
Length
389 amino acids
Sequence
(BLAST)
(BLAST)
001: MDFNMKQWSN QHESENQESP TKLPRLLLDF HSVSSDSASA AALPLFVSEP TTSTTTCTKL MSDSATTVTT KFPRIGSGGG YFSLAQWQEL ELHSLIFRHF
101: VAGAPVPSEL LHLVKKSIIA SPPPPPSYYF AHPYQQYPHY QQALMQSGYW GRAAMDPEPG RCRRTDGKKW RCSRDVVAGQ KYCERHVHRG RSRSRKPVEI
201: PTPANNGSKN NNTVSHHQAF GKMTGHAHAG GGAPQFSLSG HSPSTNAPFH LNQRPIKGPP QEVLQKDVSI GDGKSSSGQI LRHFFDDWPR QQLQEGDNAA
301: TSLSISMPGV GGNPSSDFSL KLSTGNYYDS GTQVSNVERS TWGTSHHHVA SMGGPLAEAL RSSTTNSSPT SVLHQLARGS ASEASYIST
101: VAGAPVPSEL LHLVKKSIIA SPPPPPSYYF AHPYQQYPHY QQALMQSGYW GRAAMDPEPG RCRRTDGKKW RCSRDVVAGQ KYCERHVHRG RSRSRKPVEI
201: PTPANNGSKN NNTVSHHQAF GKMTGHAHAG GGAPQFSLSG HSPSTNAPFH LNQRPIKGPP QEVLQKDVSI GDGKSSSGQI LRHFFDDWPR QQLQEGDNAA
301: TSLSISMPGV GGNPSSDFSL KLSTGNYYDS GTQVSNVERS TWGTSHHHVA SMGGPLAEAL RSSTTNSSPT SVLHQLARGS ASEASYIST
001: MDLQLKQWRS QQQNESEEQG SAATKISNFF FDQIQSQTAT SAAAAPLPLF VPEPTSSSSF SCFSPDSSNS SSSSRFLKMG NFFSWAQWQE LELQALIYRY
101: MLAGASVPQE LLLPIKKSLL HQSPMHFLHH PLQHSFPHHQ PSWYWGRGAM DPEPGRCKRT DGKKWRCSRD VVAGHKYCDR HIHRGRNRSR KPVETATTTI
201: TTTATTTASS FVLGEELGHG PNNNHFFSSG SSQPLHLSHQ QSCSSEMKQE SNNNKRPYEA NSGFSNGRSD DGHILRHFFD DWPRSSDSTS SPMSSSTCHL
301: SISMPGNNTS SDVSLKLSTG NEEEEENMRN NNNEREQMNW WSNGGNHHNN MGGPLAEALR SASSTSSVLH QMGISTQVFH
101: MLAGASVPQE LLLPIKKSLL HQSPMHFLHH PLQHSFPHHQ PSWYWGRGAM DPEPGRCKRT DGKKWRCSRD VVAGHKYCDR HIHRGRNRSR KPVETATTTI
201: TTTATTTASS FVLGEELGHG PNNNHFFSSG SSQPLHLSHQ QSCSSEMKQE SNNNKRPYEA NSGFSNGRSD DGHILRHFFD DWPRSSDSTS SPMSSSTCHL
301: SISMPGNNTS SDVSLKLSTG NEEEEENMRN NNNEREQMNW WSNGGNHHNN MGGPLAEALR SASSTSSVLH QMGISTQVFH
Arabidopsis Description
GRF4Growth-regulating factor 4 [Source:UniProtKB/Swiss-Prot;Acc:Q8L8A7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.