Factsheet for Solyc04g009820.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g092070.2.1
Solyc09g009200.1.1
Solyc10g083510.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G28640.1	Solyc02g092070.2.1	AT2G22840.1	15326298
AT5G28640.1	Solyc09g009200.1.1	AT3G52910.1	15960617
AT5G28640.1	Solyc10g083510.1.1	AT3G52910.1	15960617
AT5G28640.1	Solyc02g092070.2.1	AT4G37740.1	15326298

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400065405	Potato	nucleus	95.67	92.99
Bra020616.1-P	Field mustard	nucleus	70.19	71.57
CDY33883	Canola	nucleus	70.19	71.22
AT5G28640.1	Thale cress	nucleus	71.63	70.95
Bra010002.1-P	Field mustard	nucleus	67.79	69.46
CDY05600	Canola	nucleus	68.75	69.42
KRG92707	Soybean	nucleus	70.19	68.87
Bra036131.1-P	Field mustard	nucleus	66.83	68.47
Solyc11g006230.1.1	Tomato	nucleus	72.12	67.57
KRH34114	Soybean	nucleus	68.75	67.45
CDY57020	Canola	nucleus	65.38	67.0
CDY00027	Canola	nucleus	65.38	67.0
KRG97010	Soybean	nucleus	63.94	63.33
GSMUA_Achr10P...	Banana	nucleus	56.25	54.67
VIT_07s0005g02950.t01	Wine grape	nucleus	57.69	53.57
GSMUA_Achr8P20680_001	Banana	nucleus	55.77	53.46
CDX86202	Canola	endoplasmic reticulum, extracellular	24.04	52.08
TraesCS4B01G064000.1	Wheat	nucleus	51.44	47.56
TraesCS4D01G062900.1	Wheat	nucleus	50.96	47.11
TraesCS4A01G250600.1	Wheat	nucleus	50.96	46.9
GSMUA_Achr9P10760_001	Banana	cytosol	53.37	46.25
Os03t0733600-01	Rice	nucleus	50.0	45.81
KRH68767	Soybean	cytosol	55.29	44.75
EER90925	Sorghum	nucleus	47.6	44.0
HORVU4Hr1G010610.1	Barley	cytosol, mitochondrion, nucleus	50.0	42.28
Zm00001d033905_P001	Maize	nucleus	45.67	41.85
Solyc10g009280.2.1	Tomato	nucleus	31.73	33.0
Solyc03g082480.2.1	Tomato	nucleus	30.77	32.16

Protein Annotations

EnsemblPlants:Solyc04g009820.2.1	EnsemblPlantsGene:Solyc04g009820.2	GO:GO:0003674	GO:GO:0003713	GO:GO:0006139	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0008283	GO:GO:0009058	GO:GO:0009955	GO:GO:0009987
GO:GO:0048366	GO:GO:1903506	GO:GO:1903508	InterPro:SS18_fam	PANTHER:PTHR23107	PANTHER:PTHR23107:SF15
PFAM:PF05030	SEG:seg	UniParc:UPI0000F065FE	UniProt:K4BPD7	MapMan:15.5.52.2	:

Description

GRF1-interacting factor 1 [Source:Projected from Arabidopsis thaliana (AT5G28640) UniProtKB/Swiss-Prot;Acc:Q8L8A5]

Coordinates

chr4:+:3139217..3143959

Molecular Weight (calculated)

22726.5 Da

IEP (calculated)

6.599

GRAVY (calculated)

-0.808

Length

208 amino acids

Sequence
(BLAST)

001: MQQHLMQMQP MMAAYYPTNV TTDHIQQYLD ENKSLILKIV ESQNSGKLSE CAENQARLQR NLMYLAAIAD SQPQPSSMHS QFSSGGMMQP GTHSYLQQQQ
101: QQQQAQQMAT QQLMAARSSS MLYGQQQQQS QLSQYQQGLH SSQLGMSSGS GGSTGLHHML QSESSPHGGG FSHDFGRANK QDIGSSMSAE GRGGSSGGEN
201: LYLKASED

Best Arabidopsis Sequence Match ( AT5G28640.1 )
(BLAST)

001: MQQHLMQMQP MMAGYYPSNV TSDHIQQYLD ENKSLILKIV ESQNSGKLSE CAENQARLQR NLMYLAAIAD SQPQPPSVHS QYGSAGGGMI QGEGGSHYLQ
101: QQQATQQQQM TQQSLMAARS SMLYAQQQQQ QQPYATLQHQ QLHHSQLGMS SSSGGGGSSG LHILQGEAGG FHDFGRGKPE MGSGGGGEGR GGSSGDGGET
201: LYLKSSDDGN

Arabidopsis Description

GIF1GRF1-interacting factor 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8L8A5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.