Factsheet for PGSC0003DMT400065405

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400033847
PGSC0003DMT400055151
PGSC0003DMT400072628

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G28640.1	PGSC0003DMT400055151	AT2G22840.1	15326298
AT5G28640.1	PGSC0003DMT400033847	AT3G13960.1	15960617
AT5G28640.1	PGSC0003DMT400072628	AT3G52910.1	15960617
AT5G28640.1	PGSC0003DMT400055151	AT4G37740.1	15326298

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g009820.2.1	Tomato	nucleus	92.99	95.67
Bra020616.1-P	Field mustard	nucleus	68.69	72.06
AT5G28640.1	Thale cress	nucleus	70.56	71.9
CDY33883	Canola	nucleus	68.69	71.71
CDY05600	Canola	nucleus	67.76	70.39
Bra010002.1-P	Field mustard	nucleus	66.36	69.95
PGSC0003DMT400002573	Potato	nucleus	71.96	69.06
Bra036131.1-P	Field mustard	nucleus	65.42	68.97
KRG92707	Soybean	nucleus	68.22	68.87
CDY57020	Canola	nucleus	64.02	67.49
CDY00027	Canola	nucleus	64.02	67.49
KRH34114	Soybean	nucleus	66.82	67.45
KRG97010	Soybean	nucleus	61.68	62.86
GSMUA_Achr10P...	Banana	nucleus	55.14	55.14
VIT_07s0005g02950.t01	Wine grape	nucleus	56.07	53.57
GSMUA_Achr8P20680_001	Banana	nucleus	53.27	52.53
CDX86202	Canola	endoplasmic reticulum, extracellular	23.36	52.08
TraesCS4B01G064000.1	Wheat	nucleus	50.47	48.0
TraesCS4A01G250600.1	Wheat	nucleus	50.47	47.79
TraesCS4D01G062900.1	Wheat	nucleus	50.0	47.56
GSMUA_Achr9P10760_001	Banana	cytosol	52.34	46.67
Os03t0733600-01	Rice	nucleus	49.07	46.26
KRH68767	Soybean	cytosol	52.8	43.97
EER90925	Sorghum	nucleus	45.79	43.56
HORVU4Hr1G010610.1	Barley	cytosol, mitochondrion, nucleus	49.07	42.68
Zm00001d033905_P001	Maize	nucleus	43.93	41.41
PGSC0003DMT400008338	Potato	cytosol, nucleus, plastid	31.31	34.01
PGSC0003DMT400014095	Potato	cytosol, nucleus, vacuole	31.78	34.0

Protein Annotations

EntrezGene:102593346	MapMan:15.5.52.2	GO:GO:0003674	GO:GO:0003713	GO:GO:0006139	GO:GO:0007275
GO:GO:0008150	GO:GO:0008152	GO:GO:0008283	GO:GO:0009058	GO:GO:0009955	GO:GO:0009987
GO:GO:0048366	GO:GO:1903506	GO:GO:1903508	UniProt:M1CDW7	PFAM:PF05030	EnsemblPlantsGene:PGSC0003DMG401025427
PGSC:PGSC0003DMG401025427	EnsemblPlants:PGSC0003DMT400065405	PANTHER:PTHR23107	PANTHER:PTHR23107:SF15	InterPro:SS18_fam	UniParc:UPI0000F06625
RefSeq:XP_006367027.1	SEG:seg	:	:	:	:

Description

GRF1-interacting factor 1 [Source:PGSC_GENE;Acc:PGSC0003DMG401025427]

Coordinates

chr4:-:5452682..5458225

Molecular Weight (calculated)

23324.1 Da

IEP (calculated)

6.412

GRAVY (calculated)

-0.836

Length

214 amino acids

Sequence
(BLAST)

001: MQQHLMQMQP MMAAYYPTNV TTDHIQQYLD ENKSLILKIV ESQNSGKLSE CAENQARLQR NLMYLAAIAD SQPQPSSMHS QFSSGGMMQP GTHSYLQQQQ
101: QQQQAQQMAT QQLMAARSSS MLYGQQQQQQ QQSQLSQFQQ GLHSSQLGMS SGSGGSTGLH HMLQSESSPH GGGFSHDFGR ANKQDIGSSM SAEGRGGSSG
201: GDGGENLYLK ASED

Best Arabidopsis Sequence Match ( AT5G28640.1 )
(BLAST)

001: MQQHLMQMQP MMAGYYPSNV TSDHIQQYLD ENKSLILKIV ESQNSGKLSE CAENQARLQR NLMYLAAIAD SQPQPPSVHS QYGSAGGGMI QGEGGSHYLQ
101: QQQATQQQQM TQQSLMAARS SMLYAQQQQQ QQPYATLQHQ QLHHSQLGMS SSSGGGGSSG LHILQGEAGG FHDFGRGKPE MGSGGGGEGR GGSSGDGGET
201: LYLKSSDDGN

Arabidopsis Description

GIF1GRF1-interacting factor 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8L8A5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.