Subcellular Localization
min:
: max
Winner_takes_all: vacuole, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 1
- mitochondrion 1
- vacuole 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| KRH06396 | Soybean | cytosol | 63.0 | 60.0 |
| KRH47827 | Soybean | cytosol | 62.5 | 58.69 |
| Solyc10g009280.2.1 | Tomato | nucleus | 58.0 | 58.0 |
| VIT_15s0048g02770.t01 | Wine grape | nucleus | 56.0 | 50.45 |
| EES17040 | Sorghum | cytosol | 40.0 | 43.01 |
| Zm00001d023767_P001 | Maize | cytosol | 39.0 | 42.86 |
| TraesCS5B01G114600.1 | Wheat | cytosol | 39.5 | 42.7 |
| TraesCS5A01G107700.1 | Wheat | cytosol | 39.0 | 42.16 |
| TraesCS5D01G116800.1 | Wheat | cytosol | 39.0 | 42.16 |
| HORVU5Hr1G028870.1 | Barley | cytosol | 38.5 | 41.4 |
| Zm00001d041753_P001 | Maize | cytosol, extracellular, nucleus | 37.5 | 40.98 |
| GSMUA_Achr2P21910_001 | Banana | cytosol | 36.0 | 40.91 |
| GSMUA_AchrUn_... | Banana | cytosol | 41.5 | 40.69 |
| Os12t0496900-01 | Rice | cytosol | 37.5 | 40.54 |
| TraesCS4B01G158300.1 | Wheat | cytosol | 39.0 | 40.0 |
| Os11t0615200-01 | Rice | extracellular | 40.0 | 39.02 |
| EES10114 | Sorghum | cytosol, extracellular, nucleus | 41.0 | 38.32 |
| KRH44608 | Soybean | cytosol | 30.5 | 37.42 |
| TraesCS4A01G151200.1 | Wheat | cytosol | 37.0 | 37.0 |
| GSMUA_Achr11P... | Banana | cytosol | 40.5 | 36.65 |
| PGSC0003DMT400008338 | Potato | cytosol, nucleus, plastid | 36.0 | 36.55 |
| Zm00001d048833_P001 | Maize | extracellular | 40.0 | 36.36 |
| PGSC0003DMT400065405 | Potato | nucleus | 34.0 | 31.78 |
| PGSC0003DMT400002573 | Potato | nucleus | 34.0 | 30.49 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400014095 | EnsemblPlantsGene:PGSC0003DMG400005527 | EntrezGene:102597163 | GO:GO:0003674 | GO:GO:0003713 | GO:GO:0006139 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:1903506 | GO:GO:1903508 |
| InterPro:SS18_fam | PANTHER:PTHR23107 | PANTHER:PTHR23107:SF14 | PFAM:PF05030 | PGSC:PGSC0003DMG400005527 | RefSeq:XP_006362124.1 |
| SEG:seg | UniParc:UPI0002949E0F | UniProt:M1A3Q7 | MapMan:15.5.52.2 | : | : |
Description
GRF domain class transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400005527]
Coordinates
chr10:-:5025824..5031006
Molecular Weight (calculated)
21786.8 Da
IEP (calculated)
6.796
GRAVY (calculated)
-0.733
Length
200 amino acids
Sequence
(BLAST)
(BLAST)
001: MQQPPPMIPM MPSFPSPNIT TEQIQKYLDE NKTLILAILD HQNLGKLAEC AQYQAKLQKN LMYLAAIADA QPQSPALPTQ MTPHPAMQQG GFYMQHPQAA
101: AMTQQQGMFT SKMPLQFNNP QQLHDQQQLQ HQQLQRQQQG MQLGGANSGM HSTLGSTSNV SQLTTSGAGD ARGGNKQDNS EAGADGQASS VTAQVSEERK
101: AMTQQQGMFT SKMPLQFNNP QQLHDQQQLQ HQQLQRQQQG MQLGGANSGM HSTLGSTSNV SQLTTSGAGD ARGGNKQDNS EAGADGQASS VTAQVSEERK
001: MQQSPQMIPM VLPSFPPTNN ITTEQIQKYL DENKKLIMAI LENQNLGKLA ECAQYQALLQ KNLMYLAAIA DAQPQPPAAT LTSGAMTPQA MAPNPSSMQP
101: PPSYFMQQHQ AVGMAQQIPP GIFPPRGPLQ FGSPHQFLDP QQQLHQQAMQ GHMGIRPMGL NNNNGLQHQM HHHETALAAN NAGPNDASGG GKPDGTNMSQ
201: SGADGQGGSA ARHGGGDAKT EGK
101: PPSYFMQQHQ AVGMAQQIPP GIFPPRGPLQ FGSPHQFLDP QQQLHQQAMQ GHMGIRPMGL NNNNGLQHQM HHHETALAAN NAGPNDASGG GKPDGTNMSQ
201: SGADGQGGSA ARHGGGDAKT EGK
Arabidopsis Description
GIF3GRF1-interacting factor 3 [Source:UniProtKB/Swiss-Prot;Acc:Q93VH6]
SUBAcon: [extracellular,nucleus,cytosol]
SUBAcon: [extracellular,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.