Factsheet for Zm00001d048833_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

plastid 1
cytosol 1
mitochondrion 1
extracellular 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	extracellular
YLoc:	nucleus

extracellular: 20408568

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES10114	Sorghum	cytosol, extracellular, nucleus	80.45	82.71
Os11t0615200-01	Rice	extracellular	65.0	69.76
TraesCS4B01G158300.1	Wheat	cytosol	59.09	66.67
TraesCS4A01G151200.1	Wheat	cytosol	56.82	62.5
Zm00001d023767_P001	Maize	cytosol	51.36	62.09
Zm00001d041753_P001	Maize	cytosol, extracellular, nucleus	48.64	58.47
GSMUA_Achr2P21910_001	Banana	cytosol	39.09	48.86
GSMUA_AchrUn_...	Banana	cytosol	41.82	45.1
KRH06396	Soybean	cytosol	42.73	44.76
KRH47827	Soybean	cytosol	42.73	44.13
GSMUA_Achr11P...	Banana	cytosol	42.73	42.53
VIT_15s0048g02770.t01	Wine grape	nucleus	42.27	41.89
Solyc03g082480.2.1	Tomato	nucleus	36.36	40.2
PGSC0003DMT400014095	Potato	cytosol, nucleus, vacuole	36.36	40.0
Solyc10g009280.2.1	Tomato	nucleus	36.36	40.0
PGSC0003DMT400008338	Potato	cytosol, nucleus, plastid	35.45	39.59
CDY32441	Canola	cytosol	35.91	38.92
Bra032623.1-P	Field mustard	cytosol	35.91	38.92
CDY15196	Canola	nucleus	35.91	38.54
CDY37994	Canola	cytosol	33.64	37.95
CDX90014	Canola	cytosol	35.45	37.86
AT4G00850.1	Thale cress	cytosol, extracellular, nucleus	38.18	37.67
Bra033281.1-P	Field mustard	nucleus	35.0	37.38
AT1G01160.2	Thale cress	cytosol, nucleus, vacuole	34.55	33.19
KRH44608	Soybean	cytosol	22.73	30.67
KRH53598	Soybean	nucleus	26.82	30.26
Zm00001d033905_P001	Maize	nucleus	29.09	28.19
CDY62048	Canola	cytosol, plastid	10.91	20.69

Protein Annotations

EntrezGene:100101545	MapMan:15.5.52.2	UniProt:A5HEH5	ProteinID:AQK48975.1	EMBL:BT054882	EMBL:EF515855
EMBL:EU970177	GO:GO:0003674	GO:GO:0003713	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:1903506	GO:GO:1903508	PFAM:PF05030	PANTHER:PTHR23107
PANTHER:PTHR23107:SF8	InterPro:SS18_fam	UniParc:UPI0000F0662A	EnsemblPlantsGene:Zm00001d048833	EnsemblPlants:Zm00001d048833_P001	EnsemblPlants:Zm00001d048833_T001
SEG:seg	:	:	:	:	:

Description

growth-regulating-factor-inteacting factor2 growth-regulating-factor-inteacting factor2

Coordinates

chr4:+:6134868..6138876

Molecular Weight (calculated)

23398.7 Da

IEP (calculated)

4.701

GRAVY (calculated)

-0.666

Length

220 amino acids

Sequence
(BLAST)

001: MQQQMPMPPA PAAAAAAAPP AAGITTEQIQ KYLDENKQLI LAILENQNLG KLAECAQYQA QLQKNLLYLA AIADAQPQPP QNPAGRPQMM QPGIVPGAGH
101: YMSQVPMFPP RTPLTPQQMQ EQQQQQQFQQ QQQQVQALTF PGQMVMRPGT INGMQQQQPM QADPARAAAE LQQAAPIPAD GRGSKQDTAG GASSEPSANE
201: SHKSATGADT EAGGDVAEKS

Best Arabidopsis Sequence Match ( AT4G00850.1 )
(BLAST)

001: MQQSPQMIPM VLPSFPPTNN ITTEQIQKYL DENKKLIMAI LENQNLGKLA ECAQYQALLQ KNLMYLAAIA DAQPQPPAAT LTSGAMTPQA MAPNPSSMQP
101: PPSYFMQQHQ AVGMAQQIPP GIFPPRGPLQ FGSPHQFLDP QQQLHQQAMQ GHMGIRPMGL NNNNGLQHQM HHHETALAAN NAGPNDASGG GKPDGTNMSQ
201: SGADGQGGSA ARHGGGDAKT EGK

Arabidopsis Description

GIF3GRF1-interacting factor 3 [Source:UniProtKB/Swiss-Prot;Acc:Q93VH6]
SUBAcon: [extracellular,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.