CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90014	Canola	cytosol	82.44	82.04
CDY37994	Canola	cytosol	74.15	77.95
CDY32441	Canola	cytosol	74.63	75.37
CDY62048	Canola	cytosol, plastid	40.49	71.55
AT1G01160.2	Thale cress	cytosol, nucleus, vacuole	64.39	57.64
Zm00001d023767_P001	Maize	cytosol	37.07	41.76
Zm00001d041753_P001	Maize	cytosol, extracellular, nucleus	37.07	41.53
GSMUA_Achr2P21910_001	Banana	cytosol	35.61	41.48
PGSC0003DMT400008338	Potato	cytosol, nucleus, plastid	39.51	41.12
EES17040	Sorghum	cytosol	36.59	40.32
TraesCS5B01G114600.1	Wheat	cytosol	36.1	40.0
TraesCS5D01G116800.1	Wheat	cytosol	36.1	40.0
TraesCS4B01G158300.1	Wheat	cytosol	37.56	39.49
TraesCS5A01G107700.1	Wheat	cytosol	35.61	39.46
EES10114	Sorghum	cytosol, extracellular, nucleus	40.98	39.25
HORVU5Hr1G028870.1	Barley	cytosol	35.61	39.25
GSMUA_AchrUn_...	Banana	cytosol	39.02	39.22
Solyc03g082480.2.1	Tomato	nucleus	37.56	38.69
Os11t0615200-01	Rice	extracellular	38.54	38.54
Os12t0496900-01	Rice	cytosol	34.63	38.38
TraesCS4A01G151200.1	Wheat	cytosol	36.1	37.0
Zm00001d048833_P001	Maize	extracellular	38.54	35.91
GSMUA_Achr11P...	Banana	cytosol	36.59	33.94
CDY05600	Canola	nucleus	32.2	32.04
CDY57020	Canola	nucleus	31.71	32.02
CDY00027	Canola	nucleus	31.71	32.02
CDY33883	Canola	nucleus	31.71	31.71
CDX86202	Canola	endoplasmic reticulum, extracellular	14.63	31.25
KRH53598	Soybean	nucleus	28.78	30.26

Protein Annotations

EnsemblPlants:CDY15196	EnsemblPlantsGene:GSBRNA2T00085382001	GO:GO:0003674	GO:GO:0003713	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:1903506	GO:GO:1903508	InterPro:SS18_fam
PANTHER:PTHR23107	PANTHER:PTHR23107:SF0	PFAM:PF05030	ProteinID:CDY15196	ProteinID:CDY15196.1	SEG:seg
UniParc:UPI0004EE3852	UniProt:A0A078FPZ3	MapMan:15.5.52.2	:	:	:

Description

BnaC05g00750DBnaC05g00750D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FPZ3]

Coordinates

chrLK032052:-:394511..395821

Molecular Weight (calculated)

22101.5 Da

IEP (calculated)

7.805

GRAVY (calculated)

-0.622

Length

205 amino acids

Sequence
(BLAST)

001: MQQQSPQMFP AMVPSIPSSN ITTEQIQKYL DENKKLIMAI MENQNLGKLA ECAQYQALLQ KNLMYLAAIA DAQPPPPTTG PAPAPAMASQ MTAPHPSMQP
101: PSYFMQHSQA SGMAQQQASP AGIFPTQRGP LQFGSPHQLQ DQQQQLQLHH QQAMQGGHMG IRPTGINNNN GMQQHQMLQQ PETSLGGSGA NVGLRVGKQG
201: GAEGQ

Best Arabidopsis Sequence Match ( AT1G01160.1 )
(BLAST)

001: MQQQQSPQMF PMVPSIPPAN NITTEQIQKY LDENKKLIMA IMENQNLGKL AECAQYQALL QKNLMYLAAI ADAQPPPPTP GPSPSTAVAA QMATPHSGMQ
101: PPSYFMQHPQ ASPAGIFAPR GPLQFGSPLQ FQDPQQQQQI HQQAMQGHMG IRPMGMTNNG MQHAMQQPET GLGGNVGLRG GKQDGADGQG KDDGK

Arabidopsis Description

GIF2GRF1-interacting factor 2 [Source:UniProtKB/TrEMBL;Acc:F4HQJ3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.