Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 4
- cytosol 2
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_AchrUn_... | Banana | cytosol | 57.92 | 62.75 |
| GSMUA_Achr2P21910_001 | Banana | cytosol | 43.89 | 55.11 |
| Zm00001d023767_P001 | Maize | cytosol | 44.8 | 54.4 |
| Os12t0496900-01 | Rice | cytosol | 45.25 | 54.05 |
| TraesCS5A01G107700.1 | Wheat | cytosol | 44.8 | 53.51 |
| EES17040 | Sorghum | cytosol | 44.34 | 52.69 |
| HORVU5Hr1G028870.1 | Barley | cytosol | 44.34 | 52.69 |
| TraesCS5D01G116800.1 | Wheat | cytosol | 43.89 | 52.43 |
| TraesCS5B01G114600.1 | Wheat | cytosol | 43.89 | 52.43 |
| Zm00001d041753_P001 | Maize | cytosol, extracellular, nucleus | 41.63 | 50.27 |
| Os11t0615200-01 | Rice | extracellular | 44.8 | 48.29 |
| TraesCS4B01G158300.1 | Wheat | cytosol | 42.53 | 48.21 |
| EES10114 | Sorghum | cytosol, extracellular, nucleus | 45.25 | 46.73 |
| TraesCS4A01G151200.1 | Wheat | cytosol | 42.08 | 46.5 |
| KRH47827 | Soybean | cytosol | 44.34 | 46.01 |
| KRH06396 | Soybean | cytosol | 42.53 | 44.76 |
| VIT_15s0048g02770.t01 | Wine grape | nucleus | 43.89 | 43.69 |
| Zm00001d048833_P001 | Maize | extracellular | 42.53 | 42.73 |
| PGSC0003DMT400014095 | Potato | cytosol, nucleus, vacuole | 36.65 | 40.5 |
| Solyc10g009280.2.1 | Tomato | nucleus | 34.84 | 38.5 |
| Bra032623.1-P | Field mustard | cytosol | 34.84 | 37.93 |
| CDY32441 | Canola | cytosol | 34.84 | 37.93 |
| AT4G00850.1 | Thale cress | cytosol, extracellular, nucleus | 38.01 | 37.67 |
| CDX90014 | Canola | cytosol | 34.84 | 37.38 |
| Bra033281.1-P | Field mustard | nucleus | 34.84 | 37.38 |
| PGSC0003DMT400008338 | Potato | cytosol, nucleus, plastid | 33.03 | 37.06 |
| CDY37994 | Canola | cytosol | 32.58 | 36.92 |
| Solyc03g082480.2.1 | Tomato | nucleus | 33.03 | 36.68 |
| CDY15196 | Canola | nucleus | 33.94 | 36.59 |
| KRH44608 | Soybean | cytosol | 25.79 | 34.97 |
| KRH53598 | Soybean | nucleus | 29.86 | 33.85 |
| AT1G01160.2 | Thale cress | cytosol, nucleus, vacuole | 33.48 | 32.31 |
| GSMUA_Achr8P20680_001 | Banana | nucleus | 29.86 | 30.41 |
| GSMUA_Achr10P... | Banana | nucleus | 28.51 | 29.44 |
| GSMUA_Achr9P10760_001 | Banana | cytosol | 28.96 | 26.67 |
| CDY62048 | Canola | cytosol, plastid | 11.31 | 21.55 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr11P13170_001 | EnsemblPlants:GSMUA_Achr11T13170_001 | EnsemblPlantsGene:GSMUA_Achr11G13170_001 | GO:GO:0003674 | GO:GO:0003713 | GO:GO:0006139 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:1903506 | GO:GO:1903508 |
| InterPro:SS18_fam | PANTHER:PTHR23107 | PANTHER:PTHR23107:SF8 | PFAM:PF05030 | SEG:seg | UniParc:UPI000296347D |
| UniProt:M0RRU7 | MapMan:15.5.52.2 | : | : | : | : |
Description
GRF-interacting factor 2, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr11G13170_001]
Coordinates
chr11:-:13013274..13017921
Molecular Weight (calculated)
23663.9 Da
IEP (calculated)
6.964
GRAVY (calculated)
-0.592
Length
221 amino acids
Sequence
(BLAST)
(BLAST)
001: MQQPTHPPTP VSTVPVANIT TEQIQKYLDE NKQLILAILE NQNLGKLVEC AQYQAQLQKN LLYLAAIADA QPNAPAVRPQ MMPHGSIPQA GHYMHQAPMF
101: SPRTPLQYNP QQMQEQQLHH QSQGMVFPGQ MIFRPGAANG VQSMHTGLPP GGNANPHANP SMAGFPLTGT SSSTVHGCGS KQDTISAAVA ADDSHRSSGS
201: EHGSGDADQS HIKRPEDAKA S
101: SPRTPLQYNP QQMQEQQLHH QSQGMVFPGQ MIFRPGAANG VQSMHTGLPP GGNANPHANP SMAGFPLTGT SSSTVHGCGS KQDTISAAVA ADDSHRSSGS
201: EHGSGDADQS HIKRPEDAKA S
001: MQQSPQMIPM VLPSFPPTNN ITTEQIQKYL DENKKLIMAI LENQNLGKLA ECAQYQALLQ KNLMYLAAIA DAQPQPPAAT LTSGAMTPQA MAPNPSSMQP
101: PPSYFMQQHQ AVGMAQQIPP GIFPPRGPLQ FGSPHQFLDP QQQLHQQAMQ GHMGIRPMGL NNNNGLQHQM HHHETALAAN NAGPNDASGG GKPDGTNMSQ
201: SGADGQGGSA ARHGGGDAKT EGK
101: PPSYFMQQHQ AVGMAQQIPP GIFPPRGPLQ FGSPHQFLDP QQQLHQQAMQ GHMGIRPMGL NNNNGLQHQM HHHETALAAN NAGPNDASGG GKPDGTNMSQ
201: SGADGQGGSA ARHGGGDAKT EGK
Arabidopsis Description
GIF3GRF1-interacting factor 3 [Source:UniProtKB/Swiss-Prot;Acc:Q93VH6]
SUBAcon: [extracellular,nucleus,cytosol]
SUBAcon: [extracellular,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.