Factsheet for Zm00001d041753_P001

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, nucleus, cytosol

Predictor Summary:

cytosol 1
mitochondrion 1
extracellular 1
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, extracellular, nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	extracellular
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES17040	Sorghum	cytosol	84.15	82.8
Zm00001d023767_P001	Maize	cytosol	80.87	81.32
TraesCS5B01G114600.1	Wheat	cytosol	72.68	71.89
TraesCS5A01G107700.1	Wheat	cytosol	72.13	71.35
TraesCS5D01G116800.1	Wheat	cytosol	71.58	70.81
HORVU5Hr1G028870.1	Barley	cytosol	71.58	70.43
Os12t0496900-01	Rice	cytosol	63.93	63.24
Zm00001d048833_P001	Maize	extracellular	58.47	48.64
GSMUA_AchrUn_...	Banana	cytosol	48.63	43.63
KRH47827	Soybean	cytosol	50.27	43.19
GSMUA_Achr2P21910_001	Banana	cytosol	41.53	43.18
KRH06396	Soybean	cytosol	48.63	42.38
GSMUA_Achr11P...	Banana	cytosol	50.27	41.63
VIT_15s0048g02770.t01	Wine grape	nucleus	48.63	40.09
Solyc10g009280.2.1	Tomato	nucleus	41.53	38.0
PGSC0003DMT400014095	Potato	cytosol, nucleus, vacuole	40.98	37.5
CDY15196	Canola	nucleus	41.53	37.07
CDY37994	Canola	cytosol	39.34	36.92
CDX90014	Canola	cytosol	41.53	36.89
Bra033281.1-P	Field mustard	nucleus	41.53	36.89
AT4G00850.1	Thale cress	cytosol, extracellular, nucleus	44.81	36.77
PGSC0003DMT400008338	Potato	cytosol, nucleus, plastid	39.34	36.55
CDY32441	Canola	cytosol	39.89	35.96
Bra032623.1-P	Field mustard	cytosol	39.89	35.96
Solyc03g082480.2.1	Tomato	nucleus	38.25	35.18
KRH44608	Soybean	cytosol	30.05	33.74
KRH53598	Soybean	nucleus	33.33	31.28
AT1G01160.2	Thale cress	cytosol, nucleus, vacuole	38.8	31.0
Zm00001d033905_P001	Maize	nucleus	31.15	25.11
CDY62048	Canola	cytosol, plastid	11.48	18.1

Protein Annotations

EnsemblPlants:Zm00001d041753_P001	EnsemblPlants:Zm00001d041753_T001	EnsemblPlantsGene:Zm00001d041753	EntrezGene:100282896	GO:GO:0003674	GO:GO:0003713
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:1903506
GO:GO:1903508	InterPro:SS18_fam	ncoils:Coil	PANTHER:PTHR23107	PANTHER:PTHR23107:SF8	PFAM:PF05030
ProteinID:ONM33609.1	SEG:seg	UniParc:UPI0002207DD6	UniProt:A0A1D6MY08	MapMan:15.5.52.2	:

Description

SSXT protein

Coordinates

chr3:-:135972668..135989101

Molecular Weight (calculated)

19558.4 Da

IEP (calculated)

4.568

GRAVY (calculated)

-0.502

Length

183 amino acids

Sequence
(BLAST)

001: MPMQPQAPSM TPAAGITTEQ IQKYLDENKQ LILAILENQN LGKLAECAQY QSQLQKNLLY LAAIADAQPE TAVSRPQMAP PGASPGVGQY MSQVPMFPPR
101: TPLTPQQMLE QQLQQQQAQL LNFSGQMVAR PGMVNGMLQA MQVQQAQPSP VMNRPDAGGI ASEPSGTESH RTSTGGDNGG GSD

Best Arabidopsis Sequence Match ( AT4G00850.1 )
(BLAST)

001: MQQSPQMIPM VLPSFPPTNN ITTEQIQKYL DENKKLIMAI LENQNLGKLA ECAQYQALLQ KNLMYLAAIA DAQPQPPAAT LTSGAMTPQA MAPNPSSMQP
101: PPSYFMQQHQ AVGMAQQIPP GIFPPRGPLQ FGSPHQFLDP QQQLHQQAMQ GHMGIRPMGL NNNNGLQHQM HHHETALAAN NAGPNDASGG GKPDGTNMSQ
201: SGADGQGGSA ARHGGGDAKT EGK

Arabidopsis Description

GIF3GRF1-interacting factor 3 [Source:UniProtKB/Swiss-Prot;Acc:Q93VH6]
SUBAcon: [extracellular,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.