Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS5D01G116800.1 | Wheat | cytosol | 97.3 | 97.3 |
| TraesCS5B01G114600.1 | Wheat | cytosol | 96.76 | 96.76 |
| HORVU5Hr1G028870.1 | Barley | cytosol | 94.59 | 94.09 |
| Zm00001d023767_P001 | Maize | cytosol | 77.3 | 78.57 |
| EES17040 | Sorghum | cytosol | 78.38 | 77.96 |
| Zm00001d041753_P001 | Maize | cytosol, extracellular, nucleus | 71.35 | 72.13 |
| Os12t0496900-01 | Rice | cytosol | 70.81 | 70.81 |
| TraesCS4A01G151200.1 | Wheat | cytosol | 63.78 | 59.0 |
| GSMUA_Achr2P21910_001 | Banana | cytosol | 43.24 | 45.45 |
| GSMUA_Achr11P... | Banana | cytosol | 53.51 | 44.8 |
| GSMUA_AchrUn_... | Banana | cytosol | 49.19 | 44.61 |
| KRH47827 | Soybean | cytosol | 50.81 | 44.13 |
| KRH06396 | Soybean | cytosol | 48.65 | 42.86 |
| VIT_15s0048g02770.t01 | Wine grape | nucleus | 48.11 | 40.09 |
| Solyc10g009280.2.1 | Tomato | nucleus | 42.16 | 39.0 |
| PGSC0003DMT400014095 | Potato | cytosol, nucleus, vacuole | 42.16 | 39.0 |
| PGSC0003DMT400008338 | Potato | cytosol, nucleus, plastid | 41.08 | 38.58 |
| Solyc03g082480.2.1 | Tomato | nucleus | 38.92 | 36.18 |
| AT4G00850.1 | Thale cress | cytosol, extracellular, nucleus | 43.24 | 35.87 |
| CDY15196 | Canola | nucleus | 39.46 | 35.61 |
| CDY32441 | Canola | cytosol | 38.92 | 35.47 |
| Bra032623.1-P | Field mustard | cytosol | 38.92 | 35.47 |
| CDX90014 | Canola | cytosol | 38.92 | 34.95 |
| CDY37994 | Canola | cytosol | 36.76 | 34.87 |
| Bra033281.1-P | Field mustard | nucleus | 38.38 | 34.47 |
| KRH44608 | Soybean | cytosol | 29.19 | 33.13 |
| AT1G01160.2 | Thale cress | cytosol, nucleus, vacuole | 37.84 | 30.57 |
| KRH53598 | Soybean | nucleus | 31.89 | 30.26 |
| TraesCS4A01G250600.1 | Wheat | nucleus | 36.22 | 29.65 |
| CDY62048 | Canola | cytosol, plastid | 10.81 | 17.24 |
Protein Annotations
| EnsemblPlants:TraesCS5A01G107700.1 | EnsemblPlantsGene:TraesCS5A01G107700 | GO:GO:0003674 | GO:GO:0003713 | InterPro:SS18_fam | PANTHER:PTHR23107 |
| PANTHER:PTHR23107:SF8 | PFAM:PF05030 | SEG:seg | MapMan:15.5.52.2 | : | : |
Description
No Description!
Coordinates
chr5A:-:185648222..185654163
Molecular Weight (calculated)
19466.1 Da
IEP (calculated)
4.566
GRAVY (calculated)
-0.511
Length
185 amino acids
Sequence
(BLAST)
(BLAST)
001: MQQAMPMPPA AAAPGMPPSA GLSTEQIQKY LDENKQLILA ILENQNLGKL AECAQYQAQL QKNLLYLAAI ADTQPQTTVS RPQMAPPSAS PGAGHYMSQV
101: PMFPPRTPLT PQQMQEQQLQ QQQAQMLPFA GQMVARPGAV NGMPQAPQVE PAYAAGGASS EPSGTESHRS TGADNDGGSG LADQS
101: PMFPPRTPLT PQQMQEQQLQ QQQAQMLPFA GQMVARPGAV NGMPQAPQVE PAYAAGGASS EPSGTESHRS TGADNDGGSG LADQS
001: MQQSPQMIPM VLPSFPPTNN ITTEQIQKYL DENKKLIMAI LENQNLGKLA ECAQYQALLQ KNLMYLAAIA DAQPQPPAAT LTSGAMTPQA MAPNPSSMQP
101: PPSYFMQQHQ AVGMAQQIPP GIFPPRGPLQ FGSPHQFLDP QQQLHQQAMQ GHMGIRPMGL NNNNGLQHQM HHHETALAAN NAGPNDASGG GKPDGTNMSQ
201: SGADGQGGSA ARHGGGDAKT EGK
101: PPSYFMQQHQ AVGMAQQIPP GIFPPRGPLQ FGSPHQFLDP QQQLHQQAMQ GHMGIRPMGL NNNNGLQHQM HHHETALAAN NAGPNDASGG GKPDGTNMSQ
201: SGADGQGGSA ARHGGGDAKT EGK
Arabidopsis Description
GIF3GRF1-interacting factor 3 [Source:UniProtKB/Swiss-Prot;Acc:Q93VH6]
SUBAcon: [extracellular,nucleus,cytosol]
SUBAcon: [extracellular,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.