CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Os12t0496900-01	Rice	cytosol	31.79	33.51
Zm00001d041753_P001	Maize	cytosol, extracellular, nucleus	31.28	33.33
Solyc03g082480.2.1	Tomato	nucleus	33.85	33.17
PGSC0003DMT400008338	Potato	cytosol, nucleus, plastid	33.33	32.99
GSMUA_Achr2P21910_001	Banana	cytosol	29.23	32.39
EES17040	Sorghum	cytosol	30.77	32.26
TraesCS5D01G116800.1	Wheat	cytosol	30.26	31.89
TraesCS5A01G107700.1	Wheat	cytosol	30.26	31.89
Zm00001d023767_P001	Maize	cytosol	29.23	31.32
TraesCS4B01G158300.1	Wheat	cytosol	31.28	31.28
HORVU5Hr1G028870.1	Barley	cytosol	29.74	31.18
TraesCS5B01G114600.1	Wheat	cytosol	29.23	30.81
CDY37994	Canola	cytosol	30.77	30.77
GSMUA_Achr11P...	Banana	cytosol	33.85	29.86
KRH06396	Soybean	cytosol	31.79	29.52
TraesCS4A01G151200.1	Wheat	cytosol	30.26	29.5
CDX90014	Canola	cytosol	30.77	29.13
Bra033281.1-P	Field mustard	nucleus	30.77	29.13
CDY32441	Canola	cytosol	30.26	29.06
Bra032623.1-P	Field mustard	cytosol	30.26	29.06
GSMUA_AchrUn_...	Banana	cytosol	30.26	28.92
CDY15196	Canola	nucleus	30.26	28.78
KRH47827	Soybean	cytosol	31.28	28.64
Os11t0615200-01	Rice	extracellular	28.72	27.32
Zm00001d048833_P001	Maize	extracellular	30.26	26.82
KRG97010	Soybean	nucleus	28.21	26.19
EES10114	Sorghum	cytosol, extracellular, nucleus	28.72	26.17
KRG92707	Soybean	nucleus	28.21	25.94
KRH34114	Soybean	nucleus	27.69	25.47
AT4G00850.1	Thale cress	cytosol, extracellular, nucleus	28.72	25.11
KRH44608	Soybean	cytosol	20.51	24.54
AT1G01160.2	Thale cress	cytosol, nucleus, vacuole	24.62	20.96
KRH68767	Soybean	cytosol	27.18	20.62
CDY62048	Canola	cytosol, plastid	11.79	19.83

Protein Annotations

EntrezGene:100775507	MapMan:15.5.52.2	EMBL:ACUP02003476	ncoils:Coil	EnsemblPlantsGene:GLYMA_06G134400	GO:GO:0003674
GO:GO:0003713	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:1903506	GO:GO:1903508	UniProt:I1KAZ4	EnsemblPlants:KRH53598	ProteinID:KRH53598	ProteinID:KRH53598.1
PFAM:PF05030	PANTHER:PTHR23107	PANTHER:PTHR23107:SF14	InterPro:SS18_fam	UniParc:UPI000233977E	SEG:seg

Description

hypothetical protein

Coordinates

chr6:-:11045274..11048495

Molecular Weight (calculated)

21503.3 Da

IEP (calculated)

4.604

GRAVY (calculated)

-0.585

Length

195 amino acids

Sequence
(BLAST)

001: MFNADPSFPS VPTLTTEQIQ KYLEENKELI LAILEHQNMG KFTEIAQCQA KLQHNLTFLA KLADAGSQTP TPTPLPAPTP SQVSQQAIMQ QGQGMQQPQV
101: ANQPQPDLSA LNLPLEMNDQ QQLQQHQHLA MSLQMNEQNY QLPHFLYQQQ IIPGSMGGFP VANSGLYQAS QTRLSNLSET PSSYQTGSDS GPGWS

Best Arabidopsis Sequence Match ( AT4G00850.1 )
(BLAST)

001: MQQSPQMIPM VLPSFPPTNN ITTEQIQKYL DENKKLIMAI LENQNLGKLA ECAQYQALLQ KNLMYLAAIA DAQPQPPAAT LTSGAMTPQA MAPNPSSMQP
101: PPSYFMQQHQ AVGMAQQIPP GIFPPRGPLQ FGSPHQFLDP QQQLHQQAMQ GHMGIRPMGL NNNNGLQHQM HHHETALAAN NAGPNDASGG GKPDGTNMSQ
201: SGADGQGGSA ARHGGGDAKT EGK

Arabidopsis Description

GIF3GRF1-interacting factor 3 [Source:UniProtKB/Swiss-Prot;Acc:Q93VH6]
SUBAcon: [extracellular,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.