Factsheet for PGSC0003DMT400008338

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 3
plastid 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g082480.2.1	Tomato	nucleus	82.23	81.41
Os12t0496900-01	Rice	cytosol	41.12	43.78
TraesCS5B01G114600.1	Wheat	cytosol	39.09	41.62
TraesCS5D01G116800.1	Wheat	cytosol	38.58	41.08
TraesCS5A01G107700.1	Wheat	cytosol	38.58	41.08
HORVU5Hr1G028870.1	Barley	cytosol	38.58	40.86
Zm00001d023767_P001	Maize	cytosol	37.56	40.66
EES17040	Sorghum	cytosol	38.07	40.32
CDY15196	Canola	nucleus	41.12	39.51
Zm00001d041753_P001	Maize	cytosol, extracellular, nucleus	36.55	39.34
TraesCS4B01G158300.1	Wheat	cytosol	38.58	38.97
CDY37994	Canola	cytosol	37.56	37.95
Bra032623.1-P	Field mustard	cytosol	38.58	37.44
CDY32441	Canola	cytosol	38.58	37.44
Bra033281.1-P	Field mustard	nucleus	39.09	37.38
CDX90014	Canola	cytosol	39.09	37.38
TraesCS4A01G151200.1	Wheat	cytosol	37.56	37.0
GSMUA_Achr2P21910_001	Banana	cytosol	32.99	36.93
AT4G00850.1	Thale cress	cytosol, extracellular, nucleus	41.62	36.77
GSMUA_AchrUn_...	Banana	cytosol	38.07	36.76
Os11t0615200-01	Rice	extracellular	37.56	36.1
PGSC0003DMT400014095	Potato	cytosol, nucleus, vacuole	36.55	36.0
Zm00001d048833_P001	Maize	extracellular	39.59	35.45
EES10114	Sorghum	cytosol, extracellular, nucleus	38.07	35.05
KRH53598	Soybean	nucleus	32.99	33.33
GSMUA_Achr11P...	Banana	cytosol	37.06	33.03
AT1G01160.2	Thale cress	cytosol, nucleus, vacuole	36.55	31.44
PGSC0003DMT400065405	Potato	nucleus	34.01	31.31
PGSC0003DMT400002573	Potato	nucleus	34.52	30.49
CDY62048	Canola	cytosol, plastid	14.21	24.14

Protein Annotations

EnsemblPlants:PGSC0003DMT400008338	EnsemblPlantsGene:PGSC0003DMG400003212	EntrezGene:102582966	GO:GO:0003674	GO:GO:0003713	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:1903506	GO:GO:1903508
InterPro:SS18_fam	PANTHER:PTHR23107	PANTHER:PTHR23107:SF14	PFAM:PF05030	PGSC:PGSC0003DMG400003212	RefSeq:XP_006347497.1
SEG:seg	UniParc:UPI0002956D4A	UniProt:M0ZUF2	MapMan:15.5.52.2	:	:

Description

GRF domain class transcription factor [Source:PGSC_GENE;Acc:PGSC0003DMG400003212]

Coordinates

chr3:+:47651249..47656003

Molecular Weight (calculated)

21543.5 Da

IEP (calculated)

5.853

GRAVY (calculated)

-0.727

Length

197 amino acids

Sequence
(BLAST)

001: MQQQPQPPTL NSAPPLPLSA ITTEQIQKFL DENKNLILAI LENQNLGKLS ECAQYQAMLQ KNLMYLAAIA DAQPQQSAAT SQAPSTPQLG NQMQQTQAAL
101: QQQQQQGVAI SKLPFQLNAL PTQEQQQQML QFQQQQQFQG QYGFGPTANN AMRQLMQPGL NSSGTMDVRG NKQGSLEGNP SDGLGKSGGR HVNVERE

Best Arabidopsis Sequence Match ( AT4G00850.1 )
(BLAST)

001: MQQSPQMIPM VLPSFPPTNN ITTEQIQKYL DENKKLIMAI LENQNLGKLA ECAQYQALLQ KNLMYLAAIA DAQPQPPAAT LTSGAMTPQA MAPNPSSMQP
101: PPSYFMQQHQ AVGMAQQIPP GIFPPRGPLQ FGSPHQFLDP QQQLHQQAMQ GHMGIRPMGL NNNNGLQHQM HHHETALAAN NAGPNDASGG GKPDGTNMSQ
201: SGADGQGGSA ARHGGGDAKT EGK

Arabidopsis Description

GIF3GRF1-interacting factor 3 [Source:UniProtKB/Swiss-Prot;Acc:Q93VH6]
SUBAcon: [extracellular,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.