Factsheet for GSMUA_AchrUn_randomP12670_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr11P...	Banana	cytosol	62.75	57.92
GSMUA_Achr2P21910_001	Banana	cytosol	47.06	54.55
Os12t0496900-01	Rice	cytosol	47.06	51.89
Zm00001d023767_P001	Maize	cytosol	44.61	50.0
HORVU5Hr1G028870.1	Barley	cytosol	45.1	49.46
EES17040	Sorghum	cytosol	45.1	49.46
TraesCS5A01G107700.1	Wheat	cytosol	44.61	49.19
TraesCS4B01G158300.1	Wheat	cytosol	46.57	48.72
TraesCS5B01G114600.1	Wheat	cytosol	44.12	48.65
TraesCS5D01G116800.1	Wheat	cytosol	44.12	48.65
Zm00001d041753_P001	Maize	cytosol, extracellular, nucleus	43.63	48.63
Os11t0615200-01	Rice	extracellular	48.04	47.8
EES10114	Sorghum	cytosol, extracellular, nucleus	48.04	45.79
TraesCS4A01G151200.1	Wheat	cytosol	44.61	45.5
KRH47827	Soybean	cytosol	45.1	43.19
KRH06396	Soybean	cytosol	44.12	42.86
Zm00001d048833_P001	Maize	extracellular	45.1	41.82
PGSC0003DMT400014095	Potato	cytosol, nucleus, vacuole	40.69	41.5
VIT_15s0048g02770.t01	Wine grape	nucleus	44.12	40.54
CDY15196	Canola	nucleus	39.22	39.02
CDX90014	Canola	cytosol	38.73	38.35
Bra033281.1-P	Field mustard	nucleus	38.73	38.35
Solyc03g082480.2.1	Tomato	nucleus	37.25	38.19
PGSC0003DMT400008338	Potato	cytosol, nucleus, plastid	36.76	38.07
CDY37994	Canola	cytosol	34.31	35.9
CDY32441	Canola	cytosol	35.29	35.47
Bra032623.1-P	Field mustard	cytosol	35.29	35.47
Solyc10g009280.2.1	Tomato	nucleus	34.31	35.0
KRH44608	Soybean	cytosol	25.98	32.52
AT4G00850.1	Thale cress	cytosol, extracellular, nucleus	34.8	31.84
AT1G01160.2	Thale cress	cytosol, nucleus, vacuole	34.8	31.0
KRH53598	Soybean	nucleus	28.92	30.26
GSMUA_Achr10P...	Banana	nucleus	30.88	29.44
GSMUA_Achr8P20680_001	Banana	nucleus	29.9	28.11
GSMUA_Achr9P10760_001	Banana	cytosol	32.35	27.5
CDY62048	Canola	cytosol, plastid	11.27	19.83

Protein Annotations

EnsemblPlants:GSMUA_AchrUn_randomP12670_001	EnsemblPlants:GSMUA_AchrUn_randomT12670_001	EnsemblPlantsGene:GSMUA_AchrUn_randomG12670_001	GO:GO:0003674	GO:GO:0003713	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:1903506	GO:GO:1903508
InterPro:SS18_fam	PANTHER:PTHR23107	PANTHER:PTHR23107:SF8	PFAM:PF05030	SEG:seg	UniParc:UPI000296F264
UniProt:M0U8M6	MapMan:15.5.52.2	:	:	:	:

Description

GRF-interacting factor 2, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG12670_001]

Coordinates

chrchrUn_random:+:60692513..60702605

Molecular Weight (calculated)

22249.4 Da

IEP (calculated)

6.967

GRAVY (calculated)

-0.684

Length

204 amino acids

Sequence
(BLAST)

001: MQQPTHPLAP MSTIPVSNIT TEQIQKYLDE NKQLILAILE NQNLGKLAEC AQYQAQLQKN LLYLAAIADA QPNAPAVRPQ MMMHGSIPQA GHYIQQAPVF
101: PPGAPPQYNP QQMQEQQMHQ FQGMVFPGQV AMRPGAVNGI HNMQTEPRPR TGTSSSAVDR RGNKQDANAG EVAAADSHRS SGSEHGSGDA DQLHVKRPEE
201: AKMS

Best Arabidopsis Sequence Match ( AT4G00850.1 )
(BLAST)

001: MQQSPQMIPM VLPSFPPTNN ITTEQIQKYL DENKKLIMAI LENQNLGKLA ECAQYQALLQ KNLMYLAAIA DAQPQPPAAT LTSGAMTPQA MAPNPSSMQP
101: PPSYFMQQHQ AVGMAQQIPP GIFPPRGPLQ FGSPHQFLDP QQQLHQQAMQ GHMGIRPMGL NNNNGLQHQM HHHETALAAN NAGPNDASGG GKPDGTNMSQ
201: SGADGQGGSA ARHGGGDAKT EGK

Arabidopsis Description

GIF3GRF1-interacting factor 3 [Source:UniProtKB/Swiss-Prot;Acc:Q93VH6]
SUBAcon: [extracellular,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.