Factsheet for HORVU5Hr1G028870.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
iPSORT:	plastid
MultiLoc:	cytosol
WoLF PSORT:	mitochondrion
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G107700.1	Wheat	cytosol	94.09	94.59
TraesCS5D01G116800.1	Wheat	cytosol	93.01	93.51
TraesCS5B01G114600.1	Wheat	cytosol	93.01	93.51
Zm00001d023767_P001	Maize	cytosol	74.73	76.37
EES17040	Sorghum	cytosol	76.34	76.34
Zm00001d041753_P001	Maize	cytosol, extracellular, nucleus	70.43	71.58
Os12t0496900-01	Rice	cytosol	69.35	69.73
GSMUA_Achr2P21910_001	Banana	cytosol	43.01	45.45
GSMUA_AchrUn_...	Banana	cytosol	49.46	45.1
GSMUA_Achr11P...	Banana	cytosol	52.69	44.34
KRH47827	Soybean	cytosol	50.0	43.66
KRH06396	Soybean	cytosol	47.85	42.38
VIT_15s0048g02770.t01	Wine grape	nucleus	47.31	39.64
PGSC0003DMT400008338	Potato	cytosol, nucleus, plastid	40.86	38.58
Solyc10g009280.2.1	Tomato	nucleus	41.4	38.5
PGSC0003DMT400014095	Potato	cytosol, nucleus, vacuole	41.4	38.5
Solyc03g082480.2.1	Tomato	nucleus	38.71	36.18
CDY15196	Canola	nucleus	39.25	35.61
AT4G00850.1	Thale cress	cytosol, extracellular, nucleus	42.47	35.43
CDX90014	Canola	cytosol	38.71	34.95
Bra033281.1-P	Field mustard	nucleus	38.17	34.47
CDY37994	Canola	cytosol	36.02	34.36
CDY32441	Canola	cytosol	37.1	33.99
Bra032623.1-P	Field mustard	cytosol	37.1	33.99
KRH44608	Soybean	cytosol	29.03	33.13
KRH53598	Soybean	nucleus	31.18	29.74
AT1G01160.2	Thale cress	cytosol, nucleus, vacuole	36.56	29.69
HORVU4Hr1G010610.1	Barley	cytosol, mitochondrion, nucleus	34.41	26.02
CDY62048	Canola	cytosol, plastid	10.75	17.24

Protein Annotations

EMBL:AK358333	EMBL:AK366174	EMBL:AK373473	EnsemblPlants:HORVU5Hr1G028870.1	EnsemblPlantsGene:HORVU5Hr1G028870	GO:GO:0003674
GO:GO:0003713	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:1903506	GO:GO:1903508	InterPro:SS18_fam	PANTHER:PTHR23107	PANTHER:PTHR23107:SF8	PFAM:PF05030
SEG:seg	UniParc:UPI0000F065FC	UniProt:F2D376	MapMan:15.5.52.2	:	:

Description

Predicted protein [Source:UniProtKB/TrEMBL;Acc:F2D376]

Coordinates

chrchr5H:+:171904909..171911746

Molecular Weight (calculated)

19546.2 Da

IEP (calculated)

4.566

GRAVY (calculated)

-0.500

Length

186 amino acids

Sequence
(BLAST)

001: MQQAMPMPPA AAAPGMPPSA GLSTEQIQKY LDENKQLILA ILENQNLGKL AECAQYQAQL QKNLLYLAAI ADTQPQTSVS RPQMAPPAAS PGAGHYMSQV
101: PMFPPRTPLT PQQMQEQQLQ QQQAQMLPFA GQMVARPGAV NGIPQAPQVE QPAYAAGGAS SEPSGTESHR STGADNDGGS GLADQS

Best Arabidopsis Sequence Match ( AT4G00850.1 )
(BLAST)

001: MQQSPQMIPM VLPSFPPTNN ITTEQIQKYL DENKKLIMAI LENQNLGKLA ECAQYQALLQ KNLMYLAAIA DAQPQPPAAT LTSGAMTPQA MAPNPSSMQP
101: PPSYFMQQHQ AVGMAQQIPP GIFPPRGPLQ FGSPHQFLDP QQQLHQQAMQ GHMGIRPMGL NNNNGLQHQM HHHETALAAN NAGPNDASGG GKPDGTNMSQ
201: SGADGQGGSA ARHGGGDAKT EGK

Arabidopsis Description

GIF3GRF1-interacting factor 3 [Source:UniProtKB/Swiss-Prot;Acc:Q93VH6]
SUBAcon: [extracellular,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.