Factsheet for Solyc03g082480.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
plastid 2
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400008338	Potato	cytosol, nucleus, plastid	81.41	82.23
Os12t0496900-01	Rice	cytosol	39.2	42.16
Solyc10g009280.2.1	Tomato	nucleus	41.21	41.0
TraesCS4B01G158300.1	Wheat	cytosol	38.69	39.49
TraesCS5B01G114600.1	Wheat	cytosol	36.68	39.46
TraesCS5A01G107700.1	Wheat	cytosol	36.18	38.92
TraesCS5D01G116800.1	Wheat	cytosol	36.18	38.92
HORVU5Hr1G028870.1	Barley	cytosol	36.18	38.71
Zm00001d023767_P001	Maize	cytosol	35.18	38.46
Zm00001d041753_P001	Maize	cytosol, extracellular, nucleus	35.18	38.25
EES17040	Sorghum	cytosol	35.68	38.17
CDY15196	Canola	nucleus	38.69	37.56
TraesCS4A01G151200.1	Wheat	cytosol	37.69	37.5
GSMUA_AchrUn_...	Banana	cytosol	38.19	37.25
CDY37994	Canola	cytosol	35.68	36.41
GSMUA_Achr2P21910_001	Banana	cytosol	32.16	36.36
Zm00001d048833_P001	Maize	extracellular	40.2	36.36
Os11t0615200-01	Rice	extracellular	37.19	36.1
CDY32441	Canola	cytosol	36.68	35.96
Bra032623.1-P	Field mustard	cytosol	36.68	35.96
EES10114	Sorghum	cytosol, extracellular, nucleus	38.19	35.51
CDX90014	Canola	cytosol	36.68	35.44
Bra033281.1-P	Field mustard	nucleus	36.68	35.44
AT4G00850.1	Thale cress	cytosol, extracellular, nucleus	39.7	35.43
KRH53598	Soybean	nucleus	33.17	33.85
GSMUA_Achr11P...	Banana	cytosol	36.68	33.03
AT1G01160.2	Thale cress	cytosol, nucleus, vacuole	35.68	31.0
Solyc04g009820.2.1	Tomato	nucleus	32.16	30.77
Solyc11g006230.1.1	Tomato	nucleus	31.66	28.38
CDY62048	Canola	cytosol, plastid	13.07	22.41

Protein Annotations

EnsemblPlants:Solyc03g082480.2.1	EnsemblPlantsGene:Solyc03g082480.2	GO:GO:0003674	GO:GO:0003713	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:1903506	GO:GO:1903508	InterPro:SS18_fam
PANTHER:PTHR23107	PANTHER:PTHR23107:SF0	PFAM:PF05030	SEG:seg	UniParc:UPI0002768569	UniProt:K4BI24
MapMan:15.5.52.2	:	:	:	:	:

Description

No Description!

Coordinates

chr3:+:52401641..52406127

Molecular Weight (calculated)

21819.8 Da

IEP (calculated)

5.853

GRAVY (calculated)

-0.797

Length

199 amino acids

Sequence
(BLAST)

001: MQQQQQPQPQ TLNSAPPLPL SAITTEQIQK FLDENKNLIL AILENQNLGK LSECAQYQAM LQKNLMYLAA IADAQPQQSA ATSQAQSTPQ LGNQMQQTQA
101: ALQQQQQQGV AISKLPFQLN ALPTQEQQQQ MLQFQQQQQF QGQYGFGPTA NNAMRQLMQP GLNSSGTMDV RGNKQGSLEG NPSDGLGKSG GRHVNGERE

Best Arabidopsis Sequence Match ( AT4G00850.1 )
(BLAST)

001: MQQSPQMIPM VLPSFPPTNN ITTEQIQKYL DENKKLIMAI LENQNLGKLA ECAQYQALLQ KNLMYLAAIA DAQPQPPAAT LTSGAMTPQA MAPNPSSMQP
101: PPSYFMQQHQ AVGMAQQIPP GIFPPRGPLQ FGSPHQFLDP QQQLHQQAMQ GHMGIRPMGL NNNNGLQHQM HHHETALAAN NAGPNDASGG GKPDGTNMSQ
201: SGADGQGGSA ARHGGGDAKT EGK

Arabidopsis Description

GIF3GRF1-interacting factor 3 [Source:UniProtKB/Swiss-Prot;Acc:Q93VH6]
SUBAcon: [extracellular,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.