Factsheet for Bra032623.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY32441	Canola	cytosol	100.0	100.0
Bra033281.1-P	Field mustard	nucleus	75.37	74.27
AT1G01160.2	Thale cress	cytosol, nucleus, vacuole	66.5	58.95
Zm00001d023767_P001	Maize	cytosol	38.92	43.41
EES17040	Sorghum	cytosol	38.42	41.94
GSMUA_Achr2P21910_001	Banana	cytosol	35.96	41.48
Zm00001d041753_P001	Maize	cytosol, extracellular, nucleus	35.96	39.89
TraesCS5A01G107700.1	Wheat	cytosol	35.47	38.92
PGSC0003DMT400008338	Potato	cytosol, nucleus, plastid	37.44	38.58
TraesCS5B01G114600.1	Wheat	cytosol	34.98	38.38
Os12t0496900-01	Rice	cytosol	34.98	38.38
EES10114	Sorghum	cytosol, extracellular, nucleus	40.39	38.32
TraesCS4B01G158300.1	Wheat	cytosol	36.45	37.95
TraesCS5D01G116800.1	Wheat	cytosol	34.48	37.84
HORVU5Hr1G028870.1	Barley	cytosol	33.99	37.1
Os11t0615200-01	Rice	extracellular	37.44	37.07
TraesCS4A01G151200.1	Wheat	cytosol	36.45	37.0
Solyc03g082480.2.1	Tomato	nucleus	35.96	36.68
Zm00001d048833_P001	Maize	extracellular	38.92	35.91
GSMUA_AchrUn_...	Banana	cytosol	35.47	35.29
GSMUA_Achr11P...	Banana	cytosol	37.93	34.84
Bra010002.1-P	Field mustard	nucleus	30.54	30.54
Bra020616.1-P	Field mustard	nucleus	30.54	30.39
KRH53598	Soybean	nucleus	29.06	30.26
Bra036131.1-P	Field mustard	nucleus	30.05	30.05

Protein Annotations

EnsemblPlants:Bra032623.1	EnsemblPlants:Bra032623.1-P	EnsemblPlantsGene:Bra032623	GO:GO:0003674	GO:GO:0003713	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:1903506	GO:GO:1903508
InterPro:SS18_fam	PANTHER:PTHR23107	PANTHER:PTHR23107:SF0	PFAM:PF05030	SEG:seg	UniParc:UPI00025430FB
UniProt:M4EUZ0	MapMan:15.5.52.2	:	:	:	:

Description

AT1G01160 (E=5e-042) GIF2 | SSXT protein-related / transcription co-activator-related

Coordinates

chrA09:+:36890414..36891634

Molecular Weight (calculated)

21856.3 Da

IEP (calculated)

7.233

GRAVY (calculated)

-0.741

Length

203 amino acids

Sequence
(BLAST)

001: MQQPPQMFPM APSMPPTNIT TEQIQKYLEE NKKLIMAIME NQNLGKLAEC AQYQALLQKN LMYLAAIADA QPPPSTAGAT PPPAMASQMG APHPGMQPPS
101: YFMQHPQASG MAQQAPPAGI FPPRGPLQFG SPHQLQDPQQ QHMHQQAMQG HMGMRPMGIN NNNGMQHQMQ QQPETSLGGS AANVGIRGGK QDGADGQGKD
201: DGK

Best Arabidopsis Sequence Match ( AT1G01160.1 )
(BLAST)

001: MQQQQSPQMF PMVPSIPPAN NITTEQIQKY LDENKKLIMA IMENQNLGKL AECAQYQALL QKNLMYLAAI ADAQPPPPTP GPSPSTAVAA QMATPHSGMQ
101: PPSYFMQHPQ ASPAGIFAPR GPLQFGSPLQ FQDPQQQQQI HQQAMQGHMG IRPMGMTNNG MQHAMQQPET GLGGNVGLRG GKQDGADGQG KDDGK

Arabidopsis Description

GIF2GRF1-interacting factor 2 [Source:UniProtKB/TrEMBL;Acc:F4HQJ3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.