Factsheet for Bra020616.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra000575.1-P
Bra001532.1-P
Bra006956.1-P
Bra011781.1-P
Bra017851.1-P
Bra019640.1-P
Bra021521.1-P
Bra027384.1-P
Bra028541.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G28640.1	Bra000575.1-P	AT2G22840.1	15326298
AT5G28640.1	Bra001532.1-P	AT3G13960.1	15960617
AT5G28640.1	Bra021521.1-P	AT3G13960.1	15960617
AT5G28640.1	Bra027384.1-P	AT3G13960.1	15960617
AT5G28640.1	Bra006956.1-P	AT3G52910.1	15960617
AT5G28640.1	Bra019640.1-P	AT3G52910.1	15960617
AT5G28640.1	Bra028541.1-P	AT3G52910.1	15960617
AT5G28640.1	Bra011781.1-P	AT4G37740.1	15326298
AT5G28640.1	Bra017851.1-P	AT4G37740.1	15326298

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY33883	Canola	nucleus	100.0	99.51
AT5G28640.1	Thale cress	nucleus	88.24	85.71
Bra010002.1-P	Field mustard	nucleus	82.35	82.76
Bra036131.1-P	Field mustard	nucleus	78.43	78.82
Solyc04g009820.2.1	Tomato	nucleus	71.57	70.19
PGSC0003DMT400065405	Potato	nucleus	72.06	68.69
KRG92707	Soybean	nucleus	68.14	65.57
KRH34114	Soybean	nucleus	67.65	65.09
PGSC0003DMT400002573	Potato	nucleus	69.61	63.68
Solyc11g006230.1.1	Tomato	nucleus	68.14	62.61
KRG97010	Soybean	nucleus	60.78	59.05
GSMUA_Achr8P20680_001	Banana	nucleus	57.35	53.92
GSMUA_Achr10P...	Banana	nucleus	54.41	51.87
VIT_07s0005g02950.t01	Wine grape	nucleus	56.86	51.79
KRH68767	Soybean	cytosol	58.33	46.3
GSMUA_Achr9P10760_001	Banana	cytosol	53.43	45.42
EER90925	Sorghum	nucleus	49.02	44.44
TraesCS4B01G064000.1	Wheat	nucleus	49.02	44.44
Os03t0733600-01	Rice	nucleus	49.02	44.05
TraesCS4D01G062900.1	Wheat	nucleus	48.53	44.0
TraesCS4A01G250600.1	Wheat	nucleus	48.53	43.81
Zm00001d033905_P001	Maize	nucleus	48.53	43.61
HORVU4Hr1G010610.1	Barley	cytosol, mitochondrion, nucleus	48.04	39.84
Bra033281.1-P	Field mustard	nucleus	32.35	32.04
Bra032623.1-P	Field mustard	cytosol	30.39	30.54

Protein Annotations

EnsemblPlants:Bra020616.1	EnsemblPlants:Bra020616.1-P	EnsemblPlantsGene:Bra020616	GO:GO:0003674	GO:GO:0003713	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:1903506	GO:GO:1903508
InterPro:SS18_fam	PANTHER:PTHR23107	PANTHER:PTHR23107:SF6	PFAM:PF05030	SEG:seg	UniParc:UPI00025468CD
UniProt:M4DVS2	MapMan:15.5.52.2	:	:	:	:

Description

AT5G28640 (E=8e-038) AN3, GIF, GIF1 | AN3 (ANGUSTIFOLIA 3); protein binding / transcription coactivator

Coordinates

chrA02:+:24193764..24195524

Molecular Weight (calculated)

21975.6 Da

IEP (calculated)

6.063

GRAVY (calculated)

-0.770

Length

204 amino acids

Sequence
(BLAST)

001: MQQHLMQMQP MMAGYYPSNV TSDHIQQYLD ENKSLILKIV ESQNSGKLSE CAENQARLQR NLMYLAAIAD SQPQPPSMHS QYGTAGGGGL MQGEGGSHYL
101: QQQQAIQQQQ SQQSLMAARS SMLYAQQQQQ PYATLQQQQL HHSQLGMSSS SGGGSSGLHM LQGEAGGFHD FGRGKLEMGS GEGRGGSSGD GGETLYLKSS
201: DDGN

Best Arabidopsis Sequence Match ( AT5G28640.1 )
(BLAST)

001: MQQHLMQMQP MMAGYYPSNV TSDHIQQYLD ENKSLILKIV ESQNSGKLSE CAENQARLQR NLMYLAAIAD SQPQPPSVHS QYGSAGGGMI QGEGGSHYLQ
101: QQQATQQQQM TQQSLMAARS SMLYAQQQQQ QQPYATLQHQ QLHHSQLGMS SSSGGGGSSG LHILQGEAGG FHDFGRGKPE MGSGGGGEGR GGSSGDGGET
201: LYLKSSDDGN

Arabidopsis Description

GIF1GRF1-interacting factor 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8L8A5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.