Factsheet for Bra033281.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90014	Canola	cytosol	99.03	99.03
Bra032623.1-P	Field mustard	cytosol	74.27	75.37
AT1G01160.2	Thale cress	cytosol, nucleus, vacuole	65.53	58.95
GSMUA_Achr2P21910_001	Banana	cytosol	36.41	42.61
Zm00001d023767_P001	Maize	cytosol	36.89	41.76
Zm00001d041753_P001	Maize	cytosol, extracellular, nucleus	36.89	41.53
TraesCS4B01G158300.1	Wheat	cytosol	38.84	41.03
Os11t0615200-01	Rice	extracellular	40.29	40.49
EES17040	Sorghum	cytosol	36.41	40.32
EES10114	Sorghum	cytosol, extracellular, nucleus	41.26	39.72
PGSC0003DMT400008338	Potato	cytosol, nucleus, plastid	37.38	39.09
TraesCS4A01G151200.1	Wheat	cytosol	37.86	39.0
TraesCS5D01G116800.1	Wheat	cytosol	34.95	38.92
TraesCS5B01G114600.1	Wheat	cytosol	34.95	38.92
GSMUA_AchrUn_...	Banana	cytosol	38.35	38.73
TraesCS5A01G107700.1	Wheat	cytosol	34.47	38.38
HORVU5Hr1G028870.1	Barley	cytosol	34.47	38.17
Os12t0496900-01	Rice	cytosol	33.98	37.84
Solyc03g082480.2.1	Tomato	nucleus	35.44	36.68
Zm00001d048833_P001	Maize	extracellular	37.38	35.0
GSMUA_Achr11P...	Banana	cytosol	37.38	34.84
Bra020616.1-P	Field mustard	nucleus	32.04	32.35
Bra010002.1-P	Field mustard	nucleus	31.55	32.02
Bra036131.1-P	Field mustard	nucleus	30.58	31.03
KRH53598	Soybean	nucleus	29.13	30.77

Protein Annotations

EnsemblPlants:Bra033281.1	EnsemblPlants:Bra033281.1-P	EnsemblPlantsGene:Bra033281	GO:GO:0003674	GO:GO:0003713	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:1903506	GO:GO:1903508
InterPro:SS18_fam	PANTHER:PTHR23107	PANTHER:PTHR23107:SF0	PFAM:PF05030	SEG:seg	UniParc:UPI0002545147
UniProt:M4EWU6	MapMan:15.5.52.2	:	:	:	:

Description

AT4G00850 (E=8e-033) GIF3 | GIF3 (GRF1-INTERACTING FACTOR 3); protein binding / transcription coactivator

Coordinates

chrA10:+:4516319..4517377

Molecular Weight (calculated)

22210.8 Da

IEP (calculated)

7.160

GRAVY (calculated)

-0.621

Length

206 amino acids

Sequence
(BLAST)

001: MQQMFPAMVP SIPSSNITTE QIQKYLDENK KLIMAIMENQ NLGKLAECAQ YQALLQKNLM YLAAIADAQP PPPTTAPAPA PAPAMASQMT APHPSMQPPS
101: YFMQHPQASG MAPQQASPAG IFPPQRGPLQ FGSPHQLQDP QQQLQLHQQA MQGGHMGIRP MGINNNNGMQ QHQMQQLPET SLGGSVGLRV GKQDGAEGQG
201: KDNDGK

Best Arabidopsis Sequence Match ( AT1G01160.1 )
(BLAST)

001: MQQQQSPQMF PMVPSIPPAN NITTEQIQKY LDENKKLIMA IMENQNLGKL AECAQYQALL QKNLMYLAAI ADAQPPPPTP GPSPSTAVAA QMATPHSGMQ
101: PPSYFMQHPQ ASPAGIFAPR GPLQFGSPLQ FQDPQQQQQI HQQAMQGHMG IRPMGMTNNG MQHAMQQPET GLGGNVGLRG GKQDGADGQG KDDGK

Arabidopsis Description

GIF2GRF1-interacting factor 2 [Source:UniProtKB/TrEMBL;Acc:F4HQJ3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.