CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: extracellular, nucleus, cytosol

Predictor Summary:

nucleus 4
plastid 1
cytosol 1
mitochondrion 1
extracellular 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d048833_P001	Maize	extracellular	82.71	80.45
Os11t0615200-01	Rice	extracellular	74.3	77.56
TraesCS4A01G151200.1	Wheat	cytosol	63.08	67.5
TraesCS4B01G158300.1	Wheat	cytosol	61.22	67.18
EES17040	Sorghum	cytosol	56.54	65.05
GSMUA_Achr2P21910_001	Banana	cytosol	39.72	48.3
GSMUA_AchrUn_...	Banana	cytosol	45.79	48.04
KRH47827	Soybean	cytosol	46.26	46.48
GSMUA_Achr11P...	Banana	cytosol	46.73	45.25
KRH06396	Soybean	cytosol	43.46	44.29
VIT_15s0048g02770.t01	Wine grape	nucleus	43.93	42.34
CDX90014	Canola	cytosol	40.19	41.75
Bra033281.1-P	Field mustard	nucleus	39.72	41.26
CDY37994	Canola	cytosol	37.38	41.03
PGSC0003DMT400014095	Potato	cytosol, nucleus, vacuole	38.32	41.0
CDY15196	Canola	nucleus	39.25	40.98
Solyc10g009280.2.1	Tomato	nucleus	37.85	40.5
Bra032623.1-P	Field mustard	cytosol	38.32	40.39
CDY32441	Canola	cytosol	38.32	40.39
AT4G00850.1	Thale cress	cytosol, extracellular, nucleus	40.65	39.01
Solyc03g082480.2.1	Tomato	nucleus	35.51	38.19
PGSC0003DMT400008338	Potato	cytosol, nucleus, plastid	35.05	38.07
AT1G01160.2	Thale cress	cytosol, nucleus, vacuole	38.32	35.81
KRH44608	Soybean	cytosol	24.77	32.52
KRH53598	Soybean	nucleus	26.17	28.72
EER90925	Sorghum	nucleus	28.04	26.67
CDY62048	Canola	cytosol, plastid	14.02	25.86

Protein Annotations

MapMan:15.5.52.2	EntrezGene:8068289	UniProt:C5Y6E8	EnsemblPlants:EES10114	ProteinID:EES10114	ProteinID:EES10114.1
GO:GO:0003674	GO:GO:0003713	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:1903506	GO:GO:1903508	PFAM:PF05030	PANTHER:PTHR23107	PANTHER:PTHR23107:SF8
EnsemblPlantsGene:SORBI_3005G187500	InterPro:SS18_fam	unigene:Sbi.8166	UniParc:UPI0001A86B14	RefSeq:XP_002451126.1	SEG:seg

Description

hypothetical protein

Coordinates

chr5:-:67236800..67240653

Molecular Weight (calculated)

22755.0 Da

IEP (calculated)

4.701

GRAVY (calculated)

-0.590

Length

214 amino acids

Sequence
(BLAST)

001: MQQQMPMPPA PAAAAATAPP AAGITTEQIQ KYLDENKQLI LAILENQNLG KLAECAQYQA QLQKNLLYLA AIADAQPQPP QNPAGRPQMM QPGIVPGAGH
101: YMSQVPMFPP RTPLTPQQMQ EQQQQQLQQQ QAQALAFPGQ MVMRPATING MQQPMQADPA RAAELQQPAS VPADGRVSKQ DTAAGVSSEP SANESHKTTT
201: GADSEAGGDV AEKS

Best Arabidopsis Sequence Match ( AT4G00850.1 )
(BLAST)

001: MQQSPQMIPM VLPSFPPTNN ITTEQIQKYL DENKKLIMAI LENQNLGKLA ECAQYQALLQ KNLMYLAAIA DAQPQPPAAT LTSGAMTPQA MAPNPSSMQP
101: PPSYFMQQHQ AVGMAQQIPP GIFPPRGPLQ FGSPHQFLDP QQQLHQQAMQ GHMGIRPMGL NNNNGLQHQM HHHETALAAN NAGPNDASGG GKPDGTNMSQ
201: SGADGQGGSA ARHGGGDAKT EGK

Arabidopsis Description

GIF3GRF1-interacting factor 3 [Source:UniProtKB/Swiss-Prot;Acc:Q93VH6]
SUBAcon: [extracellular,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.