Factsheet for VIT_15s0048g02770.t01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH47827	Soybean	cytosol	74.32	77.46
KRH06396	Soybean	cytosol	68.92	72.86
Solyc10g009280.2.1	Tomato	nucleus	54.05	60.0
PGSC0003DMT400014095	Potato	cytosol, nucleus, vacuole	50.45	56.0
VIT_16s0098g01110.t01	Wine grape	cytosol, mitochondrion, nucleus	49.55	54.46
Zm00001d023767_P001	Maize	cytosol	41.44	50.55
EES17040	Sorghum	cytosol	41.44	49.46
KRH44608	Soybean	cytosol	36.04	49.08
GSMUA_Achr2P21910_001	Banana	cytosol	38.74	48.86
TraesCS4B01G158300.1	Wheat	cytosol	42.79	48.72
TraesCS5D01G116800.1	Wheat	cytosol	40.54	48.65
TraesCS5B01G114600.1	Wheat	cytosol	40.54	48.65
Zm00001d041753_P001	Maize	cytosol, extracellular, nucleus	40.09	48.63
TraesCS5A01G107700.1	Wheat	cytosol	40.09	48.11
HORVU5Hr1G028870.1	Barley	cytosol	39.64	47.31
TraesCS4A01G151200.1	Wheat	cytosol	41.89	46.5
Os12t0496900-01	Rice	cytosol	38.74	46.49
Os11t0615200-01	Rice	extracellular	42.79	46.34
GSMUA_AchrUn_...	Banana	cytosol	40.54	44.12
EES10114	Sorghum	cytosol, extracellular, nucleus	42.34	43.93
GSMUA_Achr11P...	Banana	cytosol	43.69	43.89
Zm00001d048833_P001	Maize	extracellular	41.89	42.27
VIT_14s0081g00200.t01	Wine grape	nucleus	37.39	37.22
VIT_07s0005g02950.t01	Wine grape	nucleus	34.68	34.38

Protein Annotations

EntrezGene:100262678	wikigene:100262678	MapMan:15.5.52.2	ProteinID:CCB61287	ProteinID:CCB61287.1	UniProt:F6I2X0
EMBL:FN596739	GO:GO:0003674	GO:GO:0003713	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:1903506	GO:GO:1903508	EntrezGene:LOC100262678	wikigene:LOC100262678
PFAM:PF05030	PANTHER:PTHR23107	PANTHER:PTHR23107:SF0	InterPro:SS18_fam	TIGR:TC54763	UniParc:UPI00015CA7E2
ArrayExpress:VIT_15s0048g02770	EnsemblPlantsGene:VIT_15s0048g02770	EnsemblPlants:VIT_15s0048g02770.t01	unigene:Vvi.12158	RefSeq:XP_002263524	RefSeq:XP_002263524.1
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr15:+:16901877..16906784

Molecular Weight (calculated)

23332.7 Da

IEP (calculated)

5.900

GRAVY (calculated)

-0.744

Length

222 amino acids

Sequence
(BLAST)

001: MQQNPQMIPV MPSFPPNNIT TEQIQKYLDE NKKLILAILD NQNLGKLAEC AQYQAQLQKN LMYLAAIADA QPQAPPTMPP QMAPHPAMQQ GGYYMQHPQA
101: AAMAQQPGLF PPKMPLQFGN PHQLQEQAQQ LQQLQQQAMQ GQMGMRPGGA NNGMHPMHPE ATLGGGSSGG PPPSAGLSDA RGGGKQDTSE AGASGGDGQG
201: SSAAGHGGDG ESPYLKGSED GK

Best Arabidopsis Sequence Match ( AT4G00850.1 )
(BLAST)

001: MQQSPQMIPM VLPSFPPTNN ITTEQIQKYL DENKKLIMAI LENQNLGKLA ECAQYQALLQ KNLMYLAAIA DAQPQPPAAT LTSGAMTPQA MAPNPSSMQP
101: PPSYFMQQHQ AVGMAQQIPP GIFPPRGPLQ FGSPHQFLDP QQQLHQQAMQ GHMGIRPMGL NNNNGLQHQM HHHETALAAN NAGPNDASGG GKPDGTNMSQ
201: SGADGQGGSA ARHGGGDAKT EGK

Arabidopsis Description

GIF3GRF1-interacting factor 3 [Source:UniProtKB/Swiss-Prot;Acc:Q93VH6]
SUBAcon: [extracellular,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.