Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 2
- mitochondrion 1
- extracellular 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G158300.1 | Wheat | cytosol | 78.5 | 80.51 |
| Os11t0615200-01 | Rice | extracellular | 65.5 | 63.9 |
| TraesCS5A01G107700.1 | Wheat | cytosol | 59.0 | 63.78 |
| EES10114 | Sorghum | cytosol, extracellular, nucleus | 67.5 | 63.08 |
| Zm00001d048833_P001 | Maize | extracellular | 62.5 | 56.82 |
| GSMUA_AchrUn_... | Banana | cytosol | 45.5 | 44.61 |
| KRH47827 | Soybean | cytosol | 46.5 | 43.66 |
| GSMUA_Achr2P21910_001 | Banana | cytosol | 38.0 | 43.18 |
| KRH06396 | Soybean | cytosol | 45.0 | 42.86 |
| GSMUA_Achr11P... | Banana | cytosol | 46.5 | 42.08 |
| VIT_15s0048g02770.t01 | Wine grape | nucleus | 46.5 | 41.89 |
| Bra033281.1-P | Field mustard | nucleus | 39.0 | 37.86 |
| CDX90014 | Canola | cytosol | 39.0 | 37.86 |
| Solyc03g082480.2.1 | Tomato | nucleus | 37.5 | 37.69 |
| PGSC0003DMT400008338 | Potato | cytosol, nucleus, plastid | 37.0 | 37.56 |
| Solyc10g009280.2.1 | Tomato | nucleus | 37.5 | 37.5 |
| PGSC0003DMT400014095 | Potato | cytosol, nucleus, vacuole | 37.0 | 37.0 |
| CDY32441 | Canola | cytosol | 37.0 | 36.45 |
| Bra032623.1-P | Field mustard | cytosol | 37.0 | 36.45 |
| CDY15196 | Canola | nucleus | 37.0 | 36.1 |
| CDY37994 | Canola | cytosol | 35.0 | 35.9 |
| KRH44608 | Soybean | cytosol | 28.0 | 34.36 |
| AT4G00850.1 | Thale cress | cytosol, extracellular, nucleus | 37.0 | 33.18 |
| AT1G01160.2 | Thale cress | cytosol, nucleus, vacuole | 36.5 | 31.88 |
| KRH53598 | Soybean | nucleus | 29.5 | 30.26 |
| TraesCS4A01G250600.1 | Wheat | nucleus | 33.0 | 29.2 |
| CDY62048 | Canola | cytosol, plastid | 12.0 | 20.69 |
Protein Annotations
| EnsemblPlants:TraesCS4A01G151200.1 | EnsemblPlantsGene:TraesCS4A01G151200 | GO:GO:0003674 | GO:GO:0003713 | InterPro:SS18_fam | PANTHER:PTHR23107 |
| PANTHER:PTHR23107:SF8 | PFAM:PF05030 | SEG:seg | MapMan:15.5.52.2 | : | : |
Description
No Description!
Coordinates
chr4A:+:302677794..302680922
Molecular Weight (calculated)
21074.0 Da
IEP (calculated)
5.097
GRAVY (calculated)
-0.508
Length
200 amino acids
Sequence
(BLAST)
(BLAST)
001: MQQAMSLPPG AVGAVSSPAG ITTEQIQKYL DENKQLILAI LENQNLGKLA ECAQYQAQLQ KNLLYLAAIA DAQPPQNPTS HPQMVQPGSM QGAGHYMSQV
101: PMFPPRTPLT PQQMQEQQHQ QLQQQQAQAL SFPAQVVMRP GTVNGMQQPM QAAGDLQPAA APGGSKQDAA VAGASSEPSG TKSHKNAGAE EVGADVAEQS
101: PMFPPRTPLT PQQMQEQQHQ QLQQQQAQAL SFPAQVVMRP GTVNGMQQPM QAAGDLQPAA APGGSKQDAA VAGASSEPSG TKSHKNAGAE EVGADVAEQS
001: MQQSPQMIPM VLPSFPPTNN ITTEQIQKYL DENKKLIMAI LENQNLGKLA ECAQYQALLQ KNLMYLAAIA DAQPQPPAAT LTSGAMTPQA MAPNPSSMQP
101: PPSYFMQQHQ AVGMAQQIPP GIFPPRGPLQ FGSPHQFLDP QQQLHQQAMQ GHMGIRPMGL NNNNGLQHQM HHHETALAAN NGNIWFYSSL ELIITLLIFT
201: FFLYQKRVLT MLVEEVNRMG PI
101: PPSYFMQQHQ AVGMAQQIPP GIFPPRGPLQ FGSPHQFLDP QQQLHQQAMQ GHMGIRPMGL NNNNGLQHQM HHHETALAAN NGNIWFYSSL ELIITLLIFT
201: FFLYQKRVLT MLVEEVNRMG PI
Arabidopsis Description
GIF3GRF1-interacting factor 3 [Source:UniProtKB/Swiss-Prot;Acc:Q93VH6]
SUBAcon: [mitochondrion,vacuole,cytosol]
SUBAcon: [mitochondrion,vacuole,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.