CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY62048	Canola	cytosol, plastid	57.44	96.55
CDY32441	Canola	cytosol	91.79	88.18
CDX90014	Canola	cytosol	80.0	75.73
CDY15196	Canola	nucleus	77.95	74.15
AT1G01160.2	Thale cress	cytosol, nucleus, vacuole	69.74	59.39
GSMUA_Achr2P21910_001	Banana	cytosol	37.95	42.05
Zm00001d041753_P001	Maize	cytosol, extracellular, nucleus	36.92	39.34
Zm00001d023767_P001	Maize	cytosol	35.9	38.46
EES17040	Sorghum	cytosol	35.9	37.63
PGSC0003DMT400008338	Potato	cytosol, nucleus, plastid	37.95	37.56
EES10114	Sorghum	cytosol, extracellular, nucleus	41.03	37.38
TraesCS5D01G116800.1	Wheat	cytosol	35.38	37.3
Os12t0496900-01	Rice	cytosol	35.38	37.3
TraesCS5B01G114600.1	Wheat	cytosol	34.87	36.76
TraesCS5A01G107700.1	Wheat	cytosol	34.87	36.76
Os11t0615200-01	Rice	extracellular	38.46	36.59
HORVU5Hr1G028870.1	Barley	cytosol	34.36	36.02
TraesCS4B01G158300.1	Wheat	cytosol	35.9	35.9
Solyc03g082480.2.1	Tomato	nucleus	36.41	35.68
TraesCS4A01G151200.1	Wheat	cytosol	35.9	35.0
GSMUA_AchrUn_...	Banana	cytosol	35.9	34.31
Zm00001d048833_P001	Maize	extracellular	37.95	33.64
GSMUA_Achr11P...	Banana	cytosol	36.92	32.58
KRH53598	Soybean	nucleus	30.77	30.77
CDY57020	Canola	nucleus	30.77	29.56
CDY00027	Canola	nucleus	30.77	29.56
CDY33883	Canola	nucleus	30.77	29.27
CDY05600	Canola	nucleus	29.23	27.67
CDX86202	Canola	endoplasmic reticulum, extracellular	11.28	22.92

Protein Annotations

EnsemblPlants:CDY37994	EnsemblPlantsGene:GSBRNA2T00065046001	GO:GO:0003674	GO:GO:0003713	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:1903506	GO:GO:1903508	InterPro:SS18_fam
PANTHER:PTHR23107	PANTHER:PTHR23107:SF0	PFAM:PF05030	ProteinID:CDY37994	ProteinID:CDY37994.1	SEG:seg
UniParc:UPI0004EF316F	UniProt:A0A078HKY5	MapMan:15.5.52.2	:	:	:

Description

BnaCnng08550DBnaCnng08550D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HKY5]

Coordinates

chrLK032414:+:6225..7846

Molecular Weight (calculated)

20899.1 Da

IEP (calculated)

7.233

GRAVY (calculated)

-0.749

Length

195 amino acids

Sequence
(BLAST)

001: MAPSMPPTNI TTEQIQKYLE ENKKLIMAIM ENQNLGKLAE CAQYQALLQK NLMYLAAIAD AQPPPSTAGA TPPPAMASQM GAPHPGMQPP SYFMQHPQAS
101: GMAQQAPPAG IFPPRGPLQF GSPHQLQDPQ QQHMHQQAMQ GHMGMRPMGI NNNNGMQHQM QQQQPETSLG GSAANVGLRG GKQDGADGQG KDDGK

Best Arabidopsis Sequence Match ( AT1G01160.1 )
(BLAST)

001: MQQQQSPQMF PMVPSIPPAN NITTEQIQKY LDENKKLIMA IMENQNLGKL AECAQYQALL QKNLMYLAAI ADAQPPPPTP GPSPSTAVAA QMATPHSGMQ
101: PPSYFMQHPQ ASPAGIFAPR GPLQFGSPLQ FQDPQQQQQI HQQAMQGHMG IRPMGMTNNG MQHAMQQPET GLGGNVGLRG GKQDGADGQG KDDGK

Arabidopsis Description

GIF2GRF1-interacting factor 2 [Source:UniProtKB/TrEMBL;Acc:F4HQJ3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.