Subcellular Localization
min:
: max
Winner_takes_all: extracellular, endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- plastid 3
- endoplasmic reticulum 4
- extracellular 4
- golgi 3
- plasma membrane 3
- vacuole 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra010002.1-P | Field mustard | nucleus | 55.21 | 26.11 |
| CDY00027 | Canola | nucleus | 55.21 | 26.11 |
| CDY57020 | Canola | nucleus | 55.21 | 26.11 |
| CDY33883 | Canola | nucleus | 55.21 | 25.85 |
| CDY05600 | Canola | nucleus | 55.21 | 25.73 |
| AT5G28640.1 | Thale cress | nucleus | 55.21 | 25.24 |
| Solyc04g009820.2.1 | Tomato | nucleus | 52.08 | 24.04 |
| KRH34114 | Soybean | nucleus | 52.08 | 23.58 |
| PGSC0003DMT400065405 | Potato | nucleus | 52.08 | 23.36 |
| KRG97010 | Soybean | nucleus | 51.04 | 23.33 |
| KRG92707 | Soybean | nucleus | 51.04 | 23.11 |
| Solyc11g006230.1.1 | Tomato | nucleus | 48.96 | 21.17 |
| PGSC0003DMT400002573 | Potato | nucleus | 48.96 | 21.08 |
| VIT_07s0005g02950.t01 | Wine grape | nucleus | 48.96 | 20.98 |
| GSMUA_Achr10P... | Banana | nucleus | 39.58 | 17.76 |
| GSMUA_Achr8P20680_001 | Banana | nucleus | 39.58 | 17.51 |
| GSMUA_Achr9P10760_001 | Banana | cytosol | 39.58 | 15.83 |
| TraesCS4D01G062900.1 | Wheat | nucleus | 36.46 | 15.56 |
| TraesCS4B01G064000.1 | Wheat | nucleus | 36.46 | 15.56 |
| Os03t0733600-01 | Rice | nucleus | 36.46 | 15.42 |
| CDY15196 | Canola | nucleus | 31.25 | 14.63 |
| TraesCS4A01G250600.1 | Wheat | nucleus | 34.38 | 14.6 |
| EER90925 | Sorghum | nucleus | 33.33 | 14.22 |
| Zm00001d033905_P001 | Maize | nucleus | 33.33 | 14.1 |
| HORVU4Hr1G010610.1 | Barley | cytosol, mitochondrion, nucleus | 35.42 | 13.82 |
| CDX90014 | Canola | cytosol | 29.17 | 13.59 |
| CDY32441 | Canola | cytosol | 27.08 | 12.81 |
| KRH68767 | Soybean | cytosol | 32.29 | 12.06 |
| CDY37994 | Canola | cytosol | 22.92 | 11.28 |
| CDY62048 | Canola | cytosol, plastid | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:CDX86202 | EnsemblPlantsGene:GSBRNA2T00144289001 | GO:A0A078DAY7 | GO:GO:0003674 | GO:GO:0003713 | InterPro:SS18_fam |
| PANTHER:PTHR23107 | PANTHER:PTHR23107:SF15 | PFAM:PF05030 | ProteinID:CDX86202 | ProteinID:CDX86202.1 | SEG:seg |
| TMHMM:TMhelix | UniParc:UPI0004EDE614 | MapMan:15.5.52.2 | : | : | : |
Description
BnaA06g29190D
Coordinates
chrLK031845:-:336956..343384
Molecular Weight (calculated)
11217.9 Da
IEP (calculated)
8.051
GRAVY (calculated)
0.047
Length
96 amino acids
Sequence
(BLAST)
(BLAST)
1: MIAITNCLSL TLYIMSMPVW FKSYICLLSI YRHKFVLYKI AKEMQQHLMQ MQPMMAGYYP SNVTSDHIQQ YLDENKSLIL KIVESQNSGK LSECAE
001: MQQHLMQMQP MMAGYYPSNV TSDHIQQYLD ENKSLILKIV ESQNSGKLSE CAENQARLQR NLMYLAAIAD SQPQPPSVHS QYGSAGGGMI QGEGGSHYLQ
101: QQQATQQQQM TQQSLMAARS SMLYAQQQQQ QQPYATLQHQ QLHHSQLGMS SSSGGGGSSG LHILQGEAGG FHDFGRGKPE MGSGGGGEGR GGSSGDGGET
201: LYLKSSDDGN
101: QQQATQQQQM TQQSLMAARS SMLYAQQQQQ QQPYATLQHQ QLHHSQLGMS SSSGGGGSSG LHILQGEAGG FHDFGRGKPE MGSGGGGEGR GGSSGDGGET
201: LYLKSSDDGN
Arabidopsis Description
GIF1GRF1-interacting factor 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8L8A5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.