CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra032623.1-P	Field mustard	cytosol	100.0	100.0
CDY37994	Canola	cytosol	88.18	91.79
CDY62048	Canola	cytosol, plastid	49.26	86.21
CDY15196	Canola	nucleus	75.37	74.63
CDX90014	Canola	cytosol	74.88	73.79
AT1G01160.2	Thale cress	cytosol, nucleus, vacuole	66.5	58.95
Zm00001d023767_P001	Maize	cytosol	38.92	43.41
EES17040	Sorghum	cytosol	38.42	41.94
GSMUA_Achr2P21910_001	Banana	cytosol	35.96	41.48
Zm00001d041753_P001	Maize	cytosol, extracellular, nucleus	35.96	39.89
TraesCS5A01G107700.1	Wheat	cytosol	35.47	38.92
PGSC0003DMT400008338	Potato	cytosol, nucleus, plastid	37.44	38.58
TraesCS5B01G114600.1	Wheat	cytosol	34.98	38.38
Os12t0496900-01	Rice	cytosol	34.98	38.38
EES10114	Sorghum	cytosol, extracellular, nucleus	40.39	38.32
TraesCS4B01G158300.1	Wheat	cytosol	36.45	37.95
TraesCS5D01G116800.1	Wheat	cytosol	34.48	37.84
HORVU5Hr1G028870.1	Barley	cytosol	33.99	37.1
Os11t0615200-01	Rice	extracellular	37.44	37.07
TraesCS4A01G151200.1	Wheat	cytosol	36.45	37.0
Solyc03g082480.2.1	Tomato	nucleus	35.96	36.68
Zm00001d048833_P001	Maize	extracellular	38.92	35.91
GSMUA_AchrUn_...	Banana	cytosol	35.47	35.29
GSMUA_Achr11P...	Banana	cytosol	37.93	34.84
CDY57020	Canola	nucleus	31.03	31.03
CDY00027	Canola	nucleus	31.03	31.03
KRH53598	Soybean	nucleus	29.06	30.26
CDY33883	Canola	nucleus	30.54	30.24
CDY05600	Canola	nucleus	29.56	29.13
CDX86202	Canola	endoplasmic reticulum, extracellular	12.81	27.08

Protein Annotations

EnsemblPlants:CDY32441	EnsemblPlantsGene:GSBRNA2T00052407001	GO:GO:0003674	GO:GO:0003713	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:1903506	GO:GO:1903508	InterPro:SS18_fam
PANTHER:PTHR23107	PANTHER:PTHR23107:SF0	PFAM:PF05030	ProteinID:CDY32441	ProteinID:CDY32441.1	SEG:seg
UniParc:UPI00025430FB	UniProt:A0A078H3N6	MapMan:15.5.52.2	:	:	:

Description

BnaA09g51550DBnaA09g51550D protein [Source:UniProtKB/TrEMBL;Acc:A0A078H3N6]

Coordinates

chrLK032295:-:22489..24058

Molecular Weight (calculated)

21856.3 Da

IEP (calculated)

7.233

GRAVY (calculated)

-0.741

Length

203 amino acids

Sequence
(BLAST)

001: MQQPPQMFPM APSMPPTNIT TEQIQKYLEE NKKLIMAIME NQNLGKLAEC AQYQALLQKN LMYLAAIADA QPPPSTAGAT PPPAMASQMG APHPGMQPPS
101: YFMQHPQASG MAQQAPPAGI FPPRGPLQFG SPHQLQDPQQ QHMHQQAMQG HMGMRPMGIN NNNGMQHQMQ QQPETSLGGS AANVGIRGGK QDGADGQGKD
201: DGK

Best Arabidopsis Sequence Match ( AT1G01160.1 )
(BLAST)

001: MQQQQSPQMF PMVPSIPPAN NITTEQIQKY LDENKKLIMA IMENQNLGKL AECAQYQALL QKNLMYLAAI ADAQPPPPTP GPSPSTAVAA QMATPHSGMQ
101: PPSYFMQHPQ ASPAGIFAPR GPLQFGSPLQ FQDPQQQQQI HQQAMQGHMG IRPMGMTNNG MQHAMQQPET GLGGNVGLRG GKQDGADGQG KDDGK

Arabidopsis Description

GIF2GRF1-interacting factor 2 [Source:UniProtKB/TrEMBL;Acc:F4HQJ3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.