Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 1
- extracellular 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra033281.1-P | Field mustard | nucleus | 99.03 | 99.03 |
| CDY15196 | Canola | nucleus | 82.04 | 82.44 |
| CDY37994 | Canola | cytosol | 75.73 | 80.0 |
| CDY32441 | Canola | cytosol | 73.79 | 74.88 |
| CDY62048 | Canola | cytosol, plastid | 41.75 | 74.14 |
| AT1G01160.2 | Thale cress | cytosol, nucleus, vacuole | 65.53 | 58.95 |
| GSMUA_Achr2P21910_001 | Banana | cytosol | 36.41 | 42.61 |
| Zm00001d023767_P001 | Maize | cytosol | 36.89 | 41.76 |
| Zm00001d041753_P001 | Maize | cytosol, extracellular, nucleus | 36.89 | 41.53 |
| TraesCS4B01G158300.1 | Wheat | cytosol | 38.84 | 41.03 |
| Os11t0615200-01 | Rice | extracellular | 40.29 | 40.49 |
| EES17040 | Sorghum | cytosol | 36.41 | 40.32 |
| EES10114 | Sorghum | cytosol, extracellular, nucleus | 41.75 | 40.19 |
| TraesCS5B01G114600.1 | Wheat | cytosol | 35.44 | 39.46 |
| TraesCS5D01G116800.1 | Wheat | cytosol | 35.44 | 39.46 |
| PGSC0003DMT400008338 | Potato | cytosol, nucleus, plastid | 37.38 | 39.09 |
| TraesCS4A01G151200.1 | Wheat | cytosol | 37.86 | 39.0 |
| TraesCS5A01G107700.1 | Wheat | cytosol | 34.95 | 38.92 |
| GSMUA_AchrUn_... | Banana | cytosol | 38.35 | 38.73 |
| HORVU5Hr1G028870.1 | Barley | cytosol | 34.95 | 38.71 |
| Os12t0496900-01 | Rice | cytosol | 33.98 | 37.84 |
| Solyc03g082480.2.1 | Tomato | nucleus | 35.44 | 36.68 |
| Zm00001d048833_P001 | Maize | extracellular | 37.86 | 35.45 |
| GSMUA_Achr11P... | Banana | cytosol | 37.38 | 34.84 |
| CDY33883 | Canola | nucleus | 32.04 | 32.2 |
| CDY57020 | Canola | nucleus | 31.07 | 31.53 |
| CDY00027 | Canola | nucleus | 31.07 | 31.53 |
| KRH53598 | Soybean | nucleus | 29.13 | 30.77 |
| CDY05600 | Canola | nucleus | 30.58 | 30.58 |
| CDX86202 | Canola | endoplasmic reticulum, extracellular | 13.59 | 29.17 |
Protein Annotations
| EnsemblPlants:CDX90014 | EnsemblPlantsGene:GSBRNA2T00150513001 | GO:GO:0003674 | GO:GO:0003713 | InterPro:SS18_fam | PANTHER:PTHR23107 |
| PANTHER:PTHR23107:SF0 | PFAM:PF05030 | ProteinID:CDX90014 | ProteinID:CDX90014.1 | SEG:seg | UniParc:UPI0004EE6936 |
| MapMan:15.5.52.2 | : | : | : | : | : |
Description
BnaA10g00680D
Coordinates
chrLK031861:+:1260004..1261375
Molecular Weight (calculated)
22180.7 Da
IEP (calculated)
7.160
GRAVY (calculated)
-0.619
Length
206 amino acids
Sequence
(BLAST)
(BLAST)
001: MQQMFPAMVP AIPSSNITTE QIQKYLDENK KLIMAIMENQ NLGKLAECAQ YQALLQKNLM YLAAIADAQP PPPTTGPAPA PAPAMASQMT APHPSMQPPS
101: YFMQHPQASG MAPQQASPAG IFPPQRGPLQ FGSPHQLQDP QQQLQLHQQA MQGGHMGIRP MGINNNNGMQ QHQMQQLPET SLGGSVGLRV GKQDGAEGQG
201: KDNDGK
101: YFMQHPQASG MAPQQASPAG IFPPQRGPLQ FGSPHQLQDP QQQLQLHQQA MQGGHMGIRP MGINNNNGMQ QHQMQQLPET SLGGSVGLRV GKQDGAEGQG
201: KDNDGK
001: MQQQQSPQMF PMVPSIPPAN NITTEQIQKY LDENKKLIMA IMENQNLGKL AECAQYQALL QKNLMYLAAI ADAQPPPPTP GPSPSTAVAA QMATPHSGMQ
101: PPSYFMQHPQ ASPAGIFAPR GPLQFGSPLQ FQDPQQQQQI HQQAMQGHMG IRPMGMTNNG MQHAMQQPET GLGGNVGLRG GKQDGADGQG KDDGK
101: PPSYFMQHPQ ASPAGIFAPR GPLQFGSPLQ FQDPQQQQQI HQQAMQGHMG IRPMGMTNNG MQHAMQQPET GLGGNVGLRG GKQDGADGQG KDDGK
Arabidopsis Description
GIF2GRF1-interacting factor 2 [Source:UniProtKB/TrEMBL;Acc:F4HQJ3]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.