Factsheet for Os12t0496900-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G107700.1	Wheat	cytosol	70.81	70.81
EES17040	Sorghum	cytosol	70.27	69.89
Zm00001d023767_P001	Maize	cytosol	68.65	69.78
TraesCS5D01G116800.1	Wheat	cytosol	69.73	69.73
HORVU5Hr1G028870.1	Barley	cytosol	69.73	69.35
TraesCS5B01G114600.1	Wheat	cytosol	68.11	68.11
Zm00001d041753_P001	Maize	cytosol, extracellular, nucleus	63.24	63.93
Os11t0615200-01	Rice	extracellular	59.46	53.66
GSMUA_AchrUn_...	Banana	cytosol	51.89	47.06
GSMUA_Achr2P21910_001	Banana	cytosol	43.78	46.02
GSMUA_Achr11P...	Banana	cytosol	54.05	45.25
KRH47827	Soybean	cytosol	48.11	41.78
PGSC0003DMT400008338	Potato	cytosol, nucleus, plastid	43.78	41.12
KRH06396	Soybean	cytosol	45.95	40.48
Solyc03g082480.2.1	Tomato	nucleus	42.16	39.2
Solyc10g009280.2.1	Tomato	nucleus	42.16	39.0
VIT_15s0048g02770.t01	Wine grape	nucleus	46.49	38.74
PGSC0003DMT400014095	Potato	cytosol, nucleus, vacuole	40.54	37.5
CDY37994	Canola	cytosol	37.3	35.38
CDY32441	Canola	cytosol	38.38	34.98
Bra032623.1-P	Field mustard	cytosol	38.38	34.98
CDY15196	Canola	nucleus	38.38	34.63
AT4G00850.1	Thale cress	cytosol, extracellular, nucleus	41.62	34.53
CDX90014	Canola	cytosol	37.84	33.98
Bra033281.1-P	Field mustard	nucleus	37.84	33.98
AT1G01160.2	Thale cress	cytosol, nucleus, vacuole	39.46	31.88
KRH53598	Soybean	nucleus	33.51	31.79
KRH44608	Soybean	cytosol	27.57	31.29
Os03t0733600-01	Rice	nucleus	35.68	29.07
CDY62048	Canola	cytosol, plastid	10.81	17.24

Protein Annotations

MapMan:15.5.52.2	EntrezGene:4352256	ProteinID:ABA98590.1	EMBL:AK105366	ProteinID:BAF29824.1	ProteinID:BAT17226.1
ProteinID:EEE53248.1	GO:GO:0003674	GO:GO:0003713	GO:GO:0006139	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:1903506	GO:GO:1903508	EnsemblPlantsGene:Os12g0496900	EnsemblPlants:Os12t0496900-01
PFAM:PF05030	PANTHER:PTHR23107	PANTHER:PTHR23107:SF8	UniProt:Q2QQE2	InterPro:SS18_fam	UniParc:UPI0000681073
RefSeq:XP_015618329.1	SEG:seg	:	:	:	:

Description

SSXT family protein. (Os12t0496900-01)

Coordinates

chr12:-:18855877..18860581

Molecular Weight (calculated)

20060.8 Da

IEP (calculated)

4.833

GRAVY (calculated)

-0.655

Length

185 amino acids

Sequence
(BLAST)

001: MQQQPMPMPA QAPPTAGITT EQIQKYLDEN KQLILAILEN QNLGKLAECA QYQAQLQKNL LYLAAIADTQ PQTTISRPQM VPHGASPGLG GQYMSQVPMF
101: PPRTPLTPQQ MQEQQLQQQQ AQLLSFGGQM VMRPGVVNGI PQLLQGEMHR GADHQNAGGA TSEPSESHRS TGTENDGGSD FGDQS

Best Arabidopsis Sequence Match ( AT4G00850.2 )
(BLAST)

001: MQQSPQMIPM VLPSFPPTNN ITTEQIQKYL DENKKLIMAI LENQNLGKLA ECAQYQALLQ KNLMYLAAIA DAQPQPPAAT LTSGAMTPQA MAPNPSSMQP
101: PPSYFMQQHQ AVGMAQQIPP GIFPPRGPLQ FGSPHQFLDP QQQLHQQAMQ GHMGIRPMGL NNNNGLQHQM HHHETALAAN NGNIWFYSSL ELIITLLIFT
201: FFLYQKRVLT MLVEEVNRMG PI

Arabidopsis Description

GIF3GRF1-interacting factor 3 [Source:UniProtKB/Swiss-Prot;Acc:Q93VH6]
SUBAcon: [mitochondrion,vacuole,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.