Factsheet for Os03t0733600-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

cytosol: 29051769
nucleus: 29051769

gfp PMID: 29051769 doi

Z He, J Zeng, Y Ren, D Chen, W Li, F Gao, Y Cao, T Luo, G Yuan, X Wu, Y Liang, Q Deng, S Wang, A Zheng, J Zhu, H Liu, L Wang, P Li, S Li

Rice Research Institute, Sichuan Agricultural University, Wenjiang, China., State Key Laboratory of Hybrid Rice, Hunan Hybrid Rice Research Center, Changsha, China., State Key Laboratory of Hybrid Rice, Sichuan Agricultural University, Chengdu, China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os02t0776900-01
Os03t0674700-01
Os03t0729500-01
Os06t0204800-00
Os12t0484900-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G28640.1	Os03t0674700-01	AT2G22840.1	15326298
AT5G28640.1	Os03t0729500-01	AT2G22840.1	15326298
AT5G28640.1	Os12t0484900-01	AT2G22840.1	15326298
AT5G28640.1	Os02t0776900-01	AT3G13960.1	15960617
AT5G28640.1	Os06t0204800-00	AT3G13960.1	15960617
AT5G28640.1	Os03t0674700-01	AT4G37740.1	15326298
AT5G28640.1	Os03t0729500-01	AT4G37740.1	15326298
AT5G28640.1	Os12t0484900-01	AT4G37740.1	15326298

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4D01G062900.1	Wheat	nucleus	83.7	84.44
TraesCS4B01G064000.1	Wheat	nucleus	81.5	82.22
TraesCS4A01G250600.1	Wheat	nucleus	79.74	80.09
EER90925	Sorghum	nucleus	76.65	77.33
Zm00001d033905_P001	Maize	nucleus	72.69	72.69
HORVU4Hr1G010610.1	Barley	cytosol, mitochondrion, nucleus	77.09	71.14
GSMUA_Achr10P...	Banana	nucleus	55.51	58.88
GSMUA_Achr8P20680_001	Banana	nucleus	55.07	57.6
GSMUA_Achr9P10760_001	Banana	cytosol	55.51	52.5
Bra036131.1-P	Field mustard	nucleus	45.81	51.23
CDY05600	Canola	nucleus	46.26	50.97
AT5G28640.1	Thale cress	nucleus	47.14	50.95
Bra010002.1-P	Field mustard	nucleus	44.93	50.25
CDY57020	Canola	nucleus	44.93	50.25
CDY00027	Canola	nucleus	44.93	50.25
Solyc04g009820.2.1	Tomato	nucleus	45.81	50.0
VIT_14s0081g00200.t01	Wine grape	nucleus	48.46	49.33
PGSC0003DMT400065405	Potato	nucleus	46.26	49.07
KRG97010	Soybean	nucleus	45.37	49.05
Bra020616.1-P	Field mustard	nucleus	44.05	49.02
PGSC0003DMT400002573	Potato	nucleus	48.02	48.88
CDY33883	Canola	nucleus	44.05	48.78
KRH34114	Soybean	nucleus	45.37	48.58
KRG92707	Soybean	nucleus	44.93	48.11
Solyc11g006230.1.1	Tomato	nucleus	46.26	47.3
VIT_07s0005g02950.t01	Wine grape	nucleus	43.61	44.2
CDX86202	Canola	endoplasmic reticulum, extracellular	15.42	36.46
Os12t0496900-01	Rice	cytosol	29.07	35.68
KRH68767	Soybean	cytosol	37.44	33.07
Os11t0615200-01	Rice	extracellular	29.07	32.2

Protein Annotations

MapMan:15.5.52.2	EntrezGene:4334010	ProteinID:AAT77876.1	ProteinID:AAT78786.1	ProteinID:ABF98717.1	EMBL:AK058575
ProteinID:BAF13088.1	ProteinID:BAS86238.1	GO:GO:0000003	GO:GO:0003674	GO:GO:0003713	GO:GO:0006139
GO:GO:0007275	GO:GO:0008150	GO:GO:0008152	GO:GO:0008283	GO:GO:0009058	GO:GO:0009790
GO:GO:0009791	GO:GO:0009955	GO:GO:0009987	GO:GO:0048366	GO:GO:0048825	GO:GO:1903506
GO:GO:1903508	EnsemblPlantsGene:Os03g0733600	EnsemblPlants:Os03t0733600-01	PFAM:PF05030	PANTHER:PTHR23107	PANTHER:PTHR23107:SF15
UniProt:Q6AVI1	InterPro:SS18_fam	UniParc:UPI00003FE5C3	RefSeq:XP_015629684.1	SEG:seg	:

Description

GRF1-interacting factor 3, GRF-interacting factor 3SSXT family protein. (Os03t0733600-01)

Coordinates

chr3:-:30045181..30048795

Molecular Weight (calculated)

23526.7 Da

IEP (calculated)

4.857

GRAVY (calculated)

-0.489

Length

227 amino acids

Sequence
(BLAST)

001: MQQQHLMQMN QGMMGGYASP TTVTTDLIQQ YLDENKQLIL AILDNQNNGK VEECARNQAK LQHNLMYLAA IADSQPPQTA AMSQYPSNLM MQSGARYMPQ
101: QSAQMMAPQS LMAARSSMMY AQPALSPLQQ QQQQQAAAAH GQLGMGSGGT TSGFSILHGE ASMGGGGGGG GAGNSMMNAG VFSDFGRGGG GGGKEGSTSL
201: SVDVRGANSG AQSGDGEYLK GTEEEGS

Best Arabidopsis Sequence Match ( AT5G28640.1 )
(BLAST)

001: MQQHLMQMQP MMAGYYPSNV TSDHIQQYLD ENKSLILKIV ESQNSGKLSE CAENQARLQR NLMYLAAIAD SQPQPPSVHS QYGSAGGGMI QGEGGSHYLQ
101: QQQATQQQQM TQQSLMAARS SMLYAQQQQQ QQPYATLQHQ QLHHSQLGMS SSSGGGGSSG LHILQGEAGG FHDFGRGKPE MGSGGGGEGR GGSSGDGGET
201: LYLKSSDDGN

Arabidopsis Description

GIF1GRF1-interacting factor 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8L8A5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.