Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- plastid 1
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT5G28640.1 | Thale cress | nucleus | 87.86 | 86.19 |
| CDY33883 | Canola | nucleus | 84.47 | 84.88 |
| CDY00027 | Canola | nucleus | 80.1 | 81.28 |
| CDY57020 | Canola | nucleus | 80.1 | 81.28 |
| Solyc04g009820.2.1 | Tomato | nucleus | 69.42 | 68.75 |
| PGSC0003DMT400065405 | Potato | nucleus | 70.39 | 67.76 |
| KRH34114 | Soybean | nucleus | 66.99 | 65.09 |
| KRG92707 | Soybean | nucleus | 66.99 | 65.09 |
| PGSC0003DMT400002573 | Potato | nucleus | 69.9 | 64.57 |
| Solyc11g006230.1.1 | Tomato | nucleus | 68.45 | 63.51 |
| KRG97010 | Soybean | nucleus | 60.19 | 59.05 |
| CDX86202 | Canola | endoplasmic reticulum, extracellular | 25.73 | 55.21 |
| GSMUA_Achr10P... | Banana | nucleus | 54.85 | 52.8 |
| GSMUA_Achr8P20680_001 | Banana | nucleus | 53.88 | 51.15 |
| VIT_07s0005g02950.t01 | Wine grape | nucleus | 54.37 | 50.0 |
| Os03t0733600-01 | Rice | nucleus | 50.97 | 46.26 |
| EER90925 | Sorghum | nucleus | 50.49 | 46.22 |
| GSMUA_Achr9P10760_001 | Banana | cytosol | 52.91 | 45.42 |
| TraesCS4B01G064000.1 | Wheat | nucleus | 49.51 | 45.33 |
| TraesCS4D01G062900.1 | Wheat | nucleus | 49.03 | 44.89 |
| TraesCS4A01G250600.1 | Wheat | nucleus | 49.03 | 44.69 |
| Zm00001d033905_P001 | Maize | nucleus | 48.54 | 44.05 |
| KRH68767 | Soybean | cytosol | 53.4 | 42.8 |
| HORVU4Hr1G010610.1 | Barley | cytosol, mitochondrion, nucleus | 48.06 | 40.24 |
| CDY15196 | Canola | nucleus | 32.04 | 32.2 |
| CDX90014 | Canola | cytosol | 30.58 | 30.58 |
| CDY32441 | Canola | cytosol | 29.13 | 29.56 |
| CDY37994 | Canola | cytosol | 27.67 | 29.23 |
| CDY62048 | Canola | cytosol, plastid | 10.19 | 18.1 |
Protein Annotations
| EnsemblPlants:CDY05600 | EnsemblPlantsGene:GSBRNA2T00120563001 | GO:GO:0003674 | GO:GO:0003713 | InterPro:SS18_fam | PANTHER:PTHR23107 |
| PANTHER:PTHR23107:SF6 | PFAM:PF05030 | ProteinID:CDY05600 | ProteinID:CDY05600.1 | SEG:seg | UniParc:UPI0004EEF2E2 |
| MapMan:15.5.52.2 | : | : | : | : | : |
Description
BnaC02g39370D
Coordinates
chrLK031963:-:91031..93299
Molecular Weight (calculated)
22239.9 Da
IEP (calculated)
5.787
GRAVY (calculated)
-0.759
Length
206 amino acids
Sequence
(BLAST)
(BLAST)
001: MQQHLMQMQP MMAGYYPSNV TSDHIQQYLD ENKSLILKIV ESQNSGKLSE CAENQAKLQR NLMYLAAIAD SQPQPPSMHS QQYGSAGGGL VEGEGGCHYL
101: QQQQATQQQQ MTQQSLMAAR SSMLYAQQQQ QQPYATFQQS QLHHSQLGMS SSSGGGSSGL HILQGEAGGF HEFGRGKLEM GSGEGRGGSS GDGGETLYLK
201: SSDDGN
101: QQQQATQQQQ MTQQSLMAAR SSMLYAQQQQ QQPYATFQQS QLHHSQLGMS SSSGGGSSGL HILQGEAGGF HEFGRGKLEM GSGEGRGGSS GDGGETLYLK
201: SSDDGN
001: MQQHLMQMQP MMAGYYPSNV TSDHIQQYLD ENKSLILKIV ESQNSGKLSE CAENQARLQR NLMYLAAIAD SQPQPPSVHS QYGSAGGGMI QGEGGSHYLQ
101: QQQATQQQQM TQQSLMAARS SMLYAQQQQQ QQPYATLQHQ QLHHSQLGMS SSSGGGGSSG LHILQGEAGG FHDFGRGKPE MGSGGGGEGR GGSSGDGGET
201: LYLKSSDDGN
101: QQQATQQQQM TQQSLMAARS SMLYAQQQQQ QQPYATLQHQ QLHHSQLGMS SSSGGGGSSG LHILQGEAGG FHDFGRGKPE MGSGGGGEGR GGSSGDGGET
201: LYLKSSDDGN
Arabidopsis Description
GIF1GRF1-interacting factor 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8L8A5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.