Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, nucleus, cytosol
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- cytosol 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4A01G250600.1 | Wheat | nucleus | 82.11 | 89.38 |
| TraesCS4B01G064000.1 | Wheat | nucleus | 77.24 | 84.44 |
| TraesCS4D01G062900.1 | Wheat | nucleus | 75.61 | 82.67 |
| Os03t0733600-01 | Rice | nucleus | 71.14 | 77.09 |
| EER90925 | Sorghum | nucleus | 69.51 | 76.0 |
| Zm00001d033905_P001 | Maize | nucleus | 65.04 | 70.48 |
| GSMUA_Achr8P20680_001 | Banana | nucleus | 47.97 | 54.38 |
| GSMUA_Achr10P... | Banana | nucleus | 46.34 | 53.27 |
| Bra036131.1-P | Field mustard | nucleus | 41.46 | 50.25 |
| Solyc04g009820.2.1 | Tomato | nucleus | 42.28 | 50.0 |
| PGSC0003DMT400065405 | Potato | nucleus | 42.68 | 49.07 |
| Bra010002.1-P | Field mustard | nucleus | 39.84 | 48.28 |
| CDY00027 | Canola | nucleus | 39.84 | 48.28 |
| CDY57020 | Canola | nucleus | 39.84 | 48.28 |
| AT5G28640.1 | Thale cress | nucleus | 41.06 | 48.1 |
| CDY05600 | Canola | nucleus | 40.24 | 48.06 |
| Bra020616.1-P | Field mustard | nucleus | 39.84 | 48.04 |
| PGSC0003DMT400002573 | Potato | nucleus | 43.5 | 47.98 |
| CDY33883 | Canola | nucleus | 39.84 | 47.8 |
| KRH34114 | Soybean | nucleus | 41.06 | 47.64 |
| KRG92707 | Soybean | nucleus | 41.06 | 47.64 |
| GSMUA_Achr9P10760_001 | Banana | cytosol | 46.34 | 47.5 |
| Solyc11g006230.1.1 | Tomato | nucleus | 41.46 | 45.95 |
| KRG97010 | Soybean | nucleus | 39.02 | 45.71 |
| VIT_14s0081g00200.t01 | Wine grape | nucleus | 41.06 | 45.29 |
| VIT_07s0005g02950.t01 | Wine grape | nucleus | 38.21 | 41.96 |
| CDX86202 | Canola | endoplasmic reticulum, extracellular | 13.82 | 35.42 |
| HORVU5Hr1G028870.1 | Barley | cytosol | 26.02 | 34.41 |
| KRH68767 | Soybean | cytosol | 34.55 | 33.07 |
Protein Annotations
| MapMan:15.5.52.2 | UniProt:A0A287N6Z5 | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0003713 | GO:GO:0006139 |
| GO:GO:0007275 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0008283 | GO:GO:0009058 | GO:GO:0009790 |
| GO:GO:0009791 | GO:GO:0009955 | GO:GO:0009987 | GO:GO:0048366 | GO:GO:0048825 | GO:GO:1903508 |
| EnsemblPlantsGene:HORVU4Hr1G010610 | EnsemblPlants:HORVU4Hr1G010610.1 | PFAM:PF05030 | PANTHER:PTHR23107 | PANTHER:PTHR23107:SF15 | InterPro:SS18_fam |
| UniParc:UPI000B482724 | SEG:seg | : | : | : | : |
Description
No Description!
Coordinates
chrchr4H:-:32191008..32194281
Molecular Weight (calculated)
26202.8 Da
IEP (calculated)
5.168
GRAVY (calculated)
-0.585
Length
246 amino acids
Sequence
(BLAST)
(BLAST)
001: GGGLVWVERG EGRGSFLQLV IGMQQQHLMQ MNQSMMGGYA SSTTVTTDLI QQYLDENKQL ILAILDNQNN GKVEECARNQ AKLQQNLMYL AAIADSQPPQ
101: TASLSQYPSN LMMQSGPRYM PQQSAQMMSP QSAQMMAARS SMMYAQQAMS PLQQQQQQQQ QHQAAAHGQL GMSSGATTGF NLLHGEASMG GGGTGNSMMN
201: PSVFSDYGRG GAKEGSTSLS ADARGANSGA HSGDGEYLKG TDEEGS
101: TASLSQYPSN LMMQSGPRYM PQQSAQMMSP QSAQMMAARS SMMYAQQAMS PLQQQQQQQQ QHQAAAHGQL GMSSGATTGF NLLHGEASMG GGGTGNSMMN
201: PSVFSDYGRG GAKEGSTSLS ADARGANSGA HSGDGEYLKG TDEEGS
001: MQQHLMQMQP MMAGYYPSNV TSDHIQQYLD ENKSLILKIV ESQNSGKLSE CAENQARLQR NLMYLAAIAD SQPQPPSVHS QYGSAGGGMI QGEGGSHYLQ
101: QQQATQQQQM TQQSLMAARS SMLYAQQQQQ QQPYATLQHQ QLHHSQLGMS SSSGGGGSSG LHILQGEAGG FHDFGRGKPE MGSGGGGEGR GGSSGDGGET
201: LYLKSSDDGN
101: QQQATQQQQM TQQSLMAARS SMLYAQQQQQ QQPYATLQHQ QLHHSQLGMS SSSGGGGSSG LHILQGEAGG FHDFGRGKPE MGSGGGGEGR GGSSGDGGET
201: LYLKSSDDGN
Arabidopsis Description
GIF1GRF1-interacting factor 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8L8A5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.