Factsheet for GSMUA_Achr10P08740_001

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr1P27000_001
GSMUA_Achr3P15140_001
GSMUA_Achr3P22790_001
GSMUA_Achr4P32310_001
GSMUA_Achr7P27480_001
GSMUA_Achr8P04970_001
GSMUA_Achr8P07650_001
GSMUA_Achr8P26530_001
GSMUA_AchrUn_...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G28640.1	GSMUA_Achr1P27000_001	AT2G22840.1	15326298
AT5G28640.1	GSMUA_Achr3P15140_001	AT2G22840.1	15326298
AT5G28640.1	GSMUA_Achr4P32310_001	AT2G22840.1	15326298
AT5G28640.1	GSMUA_Achr7P27480_001	AT2G22840.1	15326298
AT5G28640.1	GSMUA_Achr8P04970_001	AT2G22840.1	15326298
AT5G28640.1	GSMUA_Achr8P26530_001	AT2G22840.1	15326298
AT5G28640.1	GSMUA_AchrUn_...	AT2G22840.1	15326298
AT5G28640.1	GSMUA_Achr3P22790_001	AT3G52910.1	15960617
AT5G28640.1	GSMUA_Achr8P07650_001	AT3G52910.1	15960617
AT5G28640.1	GSMUA_Achr1P27000_001	AT4G37740.1	15326298
AT5G28640.1	GSMUA_Achr3P15140_001	AT4G37740.1	15326298
AT5G28640.1	GSMUA_Achr4P32310_001	AT4G37740.1	15326298
AT5G28640.1	GSMUA_Achr7P27480_001	AT4G37740.1	15326298
AT5G28640.1	GSMUA_Achr8P04970_001	AT4G37740.1	15326298
AT5G28640.1	GSMUA_Achr8P26530_001	AT4G37740.1	15326298
AT5G28640.1	GSMUA_AchrUn_...	AT4G37740.1	15326298

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr8P20680_001	Banana	nucleus	79.91	78.8
GSMUA_Achr9P10760_001	Banana	cytosol	81.78	72.92
VIT_14s0081g00200.t01	Wine grape	nucleus	59.81	57.4
TraesCS4B01G064000.1	Wheat	nucleus	59.81	56.89
TraesCS4D01G062900.1	Wheat	nucleus	59.81	56.89
Solyc04g009820.2.1	Tomato	nucleus	54.67	56.25
Os03t0733600-01	Rice	nucleus	58.88	55.51
KRH34114	Soybean	nucleus	54.67	55.19
PGSC0003DMT400065405	Potato	nucleus	55.14	55.14
CDY05600	Canola	nucleus	52.8	54.85
KRG92707	Soybean	nucleus	54.21	54.72
Bra036131.1-P	Field mustard	nucleus	51.87	54.68
TraesCS4A01G250600.1	Wheat	nucleus	57.48	54.42
Bra020616.1-P	Field mustard	nucleus	51.87	54.41
AT5G28640.1	Thale cress	nucleus	53.27	54.29
Bra010002.1-P	Field mustard	nucleus	51.4	54.19
CDY33883	Canola	nucleus	51.87	54.15
EER90925	Sorghum	nucleus	56.07	53.33
KRG97010	Soybean	nucleus	52.34	53.33
CDY57020	Canola	nucleus	48.6	51.23
CDY00027	Canola	nucleus	48.6	51.23
PGSC0003DMT400002573	Potato	nucleus	53.27	51.12
Zm00001d033905_P001	Maize	nucleus	54.21	51.1
Solyc11g006230.1.1	Tomato	nucleus	52.8	50.9
VIT_07s0005g02950.t01	Wine grape	nucleus	52.34	50.0
HORVU4Hr1G010610.1	Barley	cytosol, mitochondrion, nucleus	53.27	46.34
CDX86202	Canola	endoplasmic reticulum, extracellular	17.76	39.58
KRH68767	Soybean	cytosol	43.93	36.58
GSMUA_Achr2P21910_001	Banana	cytosol	26.64	32.39
GSMUA_AchrUn_...	Banana	cytosol	29.44	30.88
GSMUA_Achr11P...	Banana	cytosol	29.44	28.51

Protein Annotations

EnsemblPlants:GSMUA_Achr10P08740_001	EnsemblPlants:GSMUA_Achr10T08740_001	EnsemblPlantsGene:GSMUA_Achr10G08740_001	GO:GO:0003674	GO:GO:0003713	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:1903506	GO:GO:1903508
InterPro:SS18_fam	PANTHER:PTHR23107	PANTHER:PTHR23107:SF15	PFAM:PF05030	SEG:seg	UniParc:UPI000296B29D
UniProt:M0RGK0	MapMan:15.5.52.2	:	:	:	:

Description

GRF-interacting factor 1, putative, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr10G08740_001]

Coordinates

chr10:-:18645552..18651892

Molecular Weight (calculated)

22954.0 Da

IEP (calculated)

4.889

GRAVY (calculated)

-0.509

Length

214 amino acids

Sequence
(BLAST)

001: MQQHLMQMQP MMAAYASPNQ VTTDIIQQYL DENKQLILAI LDNQNAGKAD ECAENQAKLQ RNLMYLAAIA DSQQQVPTIA QFPPSTVMQS APRHVQYQQA
101: QQMTPQALMA ARSSMLYAQS PISALQQQQQ AALHTQLGVS PGGNSGFNML HGEASVGGNG LPAAGVFSDF GRSSSAKQET GIALTTEGRG NNSGRQNGDG
201: TEPLYLKGSE EEAN

Best Arabidopsis Sequence Match ( AT5G28640.1 )
(BLAST)

001: MQQHLMQMQP MMAGYYPSNV TSDHIQQYLD ENKSLILKIV ESQNSGKLSE CAENQARLQR NLMYLAAIAD SQPQPPSVHS QYGSAGGGMI QGEGGSHYLQ
101: QQQATQQQQM TQQSLMAARS SMLYAQQQQQ QQPYATLQHQ QLHHSQLGMS SSSGGGGSSG LHILQGEAGG FHDFGRGKPE MGSGGGGEGR GGSSGDGGET
201: LYLKSSDDGN

Arabidopsis Description

GIF1GRF1-interacting factor 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8L8A5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.