Factsheet for PGSC0003DMT400002573

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400033847
PGSC0003DMT400055151
PGSC0003DMT400072628

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G28640.1	PGSC0003DMT400055151	AT2G22840.1	15326298
AT5G28640.1	PGSC0003DMT400033847	AT3G13960.1	15960617
AT5G28640.1	PGSC0003DMT400072628	AT3G52910.1	15960617
AT5G28640.1	PGSC0003DMT400055151	AT4G37740.1	15326298

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc11g006230.1.1	Tomato	nucleus	93.27	93.69
PGSC0003DMT400065405	Potato	nucleus	69.06	71.96
CDY05600	Canola	nucleus	64.57	69.9
Bra020616.1-P	Field mustard	nucleus	63.68	69.61
CDY33883	Canola	nucleus	63.68	69.27
AT5G28640.1	Thale cress	nucleus	64.13	68.1
Bra010002.1-P	Field mustard	nucleus	61.88	67.98
Bra036131.1-P	Field mustard	nucleus	61.88	67.98
KRG92707	Soybean	nucleus	64.57	67.92
KRH34114	Soybean	nucleus	64.13	67.45
CDY57020	Canola	nucleus	59.19	65.02
CDY00027	Canola	nucleus	59.19	65.02
KRG97010	Soybean	nucleus	60.54	64.29
GSMUA_Achr10P...	Banana	nucleus	51.12	53.27
VIT_07s0005g02950.t01	Wine grape	nucleus	52.02	51.79
GSMUA_Achr8P20680_001	Banana	nucleus	49.33	50.69
TraesCS4D01G062900.1	Wheat	nucleus	49.78	49.33
TraesCS4B01G064000.1	Wheat	nucleus	49.78	49.33
TraesCS4A01G250600.1	Wheat	nucleus	49.78	49.12
CDX86202	Canola	endoplasmic reticulum, extracellular	21.08	48.96
Os03t0733600-01	Rice	nucleus	48.88	48.02
EER90925	Sorghum	nucleus	45.74	45.33
GSMUA_Achr9P10760_001	Banana	cytosol	47.53	44.17
KRH68767	Soybean	cytosol	50.22	43.58
HORVU4Hr1G010610.1	Barley	cytosol, mitochondrion, nucleus	47.98	43.5
Zm00001d033905_P001	Maize	nucleus	43.95	43.17
PGSC0003DMT400008338	Potato	cytosol, nucleus, plastid	30.49	34.52
PGSC0003DMT400014095	Potato	cytosol, nucleus, vacuole	30.49	34.0

Protein Annotations

EnsemblPlants:PGSC0003DMT400002573	EnsemblPlantsGene:PGSC0003DMG400000988	EntrezGene:102600927	GO:GO:0003674	GO:GO:0003713	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:1903506	GO:GO:1903508
InterPro:SS18_fam	PANTHER:PTHR23107	PANTHER:PTHR23107:SF15	PFAM:PF05030	PGSC:PGSC0003DMG400000988	RefSeq:XP_006350945.1
RefSeq:XP_015165747.1	SEG:seg	UniParc:UPI0002969418	UniProt:M0ZKB5	MapMan:15.5.52.2	:

Description

Synovial sarcoma associated ss18 protein [Source:PGSC_GENE;Acc:PGSC0003DMG400000988]

Coordinates

chr11:+:6411755..6415976

Molecular Weight (calculated)

23765.7 Da

IEP (calculated)

6.412

GRAVY (calculated)

-0.733

Length

223 amino acids

Sequence
(BLAST)

001: MQQQHLMQMQ PMMAAYYPNN VTTDHIQQFL DENKSLILKI VESQNSGKIS ECAESQAKLQ RNLMYLAAIA DSQPQPPSMH SQLASGGMMQ GGAHYMQQQQ
101: AQQLTTQSLM AAARSSSSML YGQQQQQQLS SLQQQQAAYH SQQLGMSSSG GGSSSGLHML QSENTHNASI GGGGFPDFGR GLGSGNKHEM GSSMSDQGRG
201: GSSSGHGGDG GENLYLKSSE DGN

Best Arabidopsis Sequence Match ( AT5G28640.1 )
(BLAST)

001: MQQHLMQMQP MMAGYYPSNV TSDHIQQYLD ENKSLILKIV ESQNSGKLSE CAENQARLQR NLMYLAAIAD SQPQPPSVHS QYGSAGGGMI QGEGGSHYLQ
101: QQQATQQQQM TQQSLMAARS SMLYAQQQQQ QQPYATLQHQ QLHHSQLGMS SSSGGGGSSG LHILQGEAGG FHDFGRGKPE MGSGGGGEGR GGSSGDGGET
201: LYLKSSDDGN

Arabidopsis Description

GIF1GRF1-interacting factor 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8L8A5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.