Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- plastid 1
- cytosol 1
- mitochondrion 1
- nucleus 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G064000.1 | Wheat | nucleus | 96.0 | 96.0 |
| TraesCS4A01G250600.1 | Wheat | nucleus | 92.0 | 91.59 |
| Os03t0733600-01 | Rice | nucleus | 84.44 | 83.7 |
| HORVU4Hr1G010610.1 | Barley | cytosol, mitochondrion, nucleus | 82.67 | 75.61 |
| EER90925 | Sorghum | nucleus | 71.56 | 71.56 |
| Zm00001d033905_P001 | Maize | nucleus | 67.11 | 66.52 |
| GSMUA_Achr10P... | Banana | nucleus | 56.89 | 59.81 |
| GSMUA_Achr8P20680_001 | Banana | nucleus | 56.0 | 58.06 |
| GSMUA_Achr9P10760_001 | Banana | cytosol | 56.0 | 52.5 |
| Solyc04g009820.2.1 | Tomato | nucleus | 47.11 | 50.96 |
| Bra036131.1-P | Field mustard | nucleus | 45.33 | 50.25 |
| PGSC0003DMT400065405 | Potato | nucleus | 47.56 | 50.0 |
| KRH34114 | Soybean | nucleus | 47.11 | 50.0 |
| PGSC0003DMT400002573 | Potato | nucleus | 49.33 | 49.78 |
| Solyc11g006230.1.1 | Tomato | nucleus | 48.89 | 49.55 |
| KRG92707 | Soybean | nucleus | 46.67 | 49.53 |
| AT5G28640.1 | Thale cress | nucleus | 46.22 | 49.52 |
| CDY57020 | Canola | nucleus | 44.44 | 49.26 |
| CDY00027 | Canola | nucleus | 44.44 | 49.26 |
| CDY05600 | Canola | nucleus | 44.89 | 49.03 |
| Bra020616.1-P | Field mustard | nucleus | 44.0 | 48.53 |
| CDY33883 | Canola | nucleus | 44.0 | 48.29 |
| Bra010002.1-P | Field mustard | nucleus | 43.56 | 48.28 |
| VIT_14s0081g00200.t01 | Wine grape | nucleus | 47.11 | 47.53 |
| KRG97010 | Soybean | nucleus | 43.11 | 46.19 |
| VIT_07s0005g02950.t01 | Wine grape | nucleus | 45.33 | 45.54 |
| CDX86202 | Canola | endoplasmic reticulum, extracellular | 15.56 | 36.46 |
| TraesCS5D01G116800.1 | Wheat | cytosol | 28.89 | 35.14 |
| KRH68767 | Soybean | cytosol | 36.89 | 32.3 |
Protein Annotations
| EnsemblPlants:TraesCS4D01G062900.1 | EnsemblPlantsGene:TraesCS4D01G062900 | GO:GO:0000003 | GO:GO:0003674 | GO:GO:0003713 | GO:GO:0007275 |
| GO:GO:0008150 | GO:GO:0008283 | GO:GO:0009790 | GO:GO:0009791 | GO:GO:0009955 | GO:GO:0048366 |
| GO:GO:0048825 | InterPro:SS18_fam | PANTHER:PTHR23107 | PANTHER:PTHR23107:SF15 | PFAM:PF05030 | SEG:seg |
| MapMan:15.5.52.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr4D:-:38590996..38594538
Molecular Weight (calculated)
23733.8 Da
IEP (calculated)
5.124
GRAVY (calculated)
-0.609
Length
225 amino acids
Sequence
(BLAST)
(BLAST)
001: MQQQHLMQMN QSMMGGYASS TTVTTDLIQQ YLDENKQLIL AILDNQNNGK VEECARNQAK LQQNLMYLAA IADSQPPQTA SLSQYPSNLM MQSGPRYMPQ
101: QSAQMMSPQS LMAARSSMMY AQQAMSPLQQ QQQQQHQAAA HGQLGMSSGA TTGFNLLHGE ASMGGGGGGA SGNSMMNAGV FSDYGRGGSG AKEGSTSLSA
201: DARGANSGAH SGDGEYLKGT EEEGS
101: QSAQMMSPQS LMAARSSMMY AQQAMSPLQQ QQQQQHQAAA HGQLGMSSGA TTGFNLLHGE ASMGGGGGGA SGNSMMNAGV FSDYGRGGSG AKEGSTSLSA
201: DARGANSGAH SGDGEYLKGT EEEGS
001: MQQHLMQMQP MMAGYYPSNV TSDHIQQYLD ENKSLILKIV ESQNSGKLSE CAENQARLQR NLMYLAAIAD SQPQPPSVHS QYGSAGGGMI QGEGGSHYLQ
101: QQQATQQQQM TQQSLMAARS SMLYAQQQQQ QQPYATLQHQ QLHHSQLGMS SSSGGGGSSG LHILQGEAGG FHDFGRGKPE MGSGGGGEGR GGSSGDGGET
201: LYLKSSDDGN
101: QQQATQQQQM TQQSLMAARS SMLYAQQQQQ QQPYATLQHQ QLHHSQLGMS SSSGGGGSSG LHILQGEAGG FHDFGRGKPE MGSGGGGEGR GGSSGDGGET
201: LYLKSSDDGN
Arabidopsis Description
GIF1GRF1-interacting factor 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8L8A5]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.