Factsheet for TraesCS5D01G116800.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 1
extracellular 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, extracellular, mitochondrion, plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	extracellular
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5A01G107700.1	Wheat	cytosol	97.3	97.3
TraesCS5B01G114600.1	Wheat	cytosol	96.76	96.76
HORVU5Hr1G028870.1	Barley	cytosol	93.51	93.01
Zm00001d023767_P001	Maize	cytosol	76.22	77.47
EES17040	Sorghum	cytosol	77.3	76.88
Zm00001d041753_P001	Maize	cytosol, extracellular, nucleus	70.81	71.58
Os12t0496900-01	Rice	cytosol	69.73	69.73
GSMUA_Achr2P21910_001	Banana	cytosol	42.7	44.89
KRH47827	Soybean	cytosol	51.35	44.6
GSMUA_AchrUn_...	Banana	cytosol	48.65	44.12
GSMUA_Achr11P...	Banana	cytosol	52.43	43.89
KRH06396	Soybean	cytosol	49.19	43.33
VIT_15s0048g02770.t01	Wine grape	nucleus	48.65	40.54
Solyc10g009280.2.1	Tomato	nucleus	42.16	39.0
PGSC0003DMT400014095	Potato	cytosol, nucleus, vacuole	42.16	39.0
PGSC0003DMT400008338	Potato	cytosol, nucleus, plastid	41.08	38.58
Solyc03g082480.2.1	Tomato	nucleus	38.92	36.18
CDY15196	Canola	nucleus	40.0	36.1
CDX90014	Canola	cytosol	39.46	35.44
AT4G00850.1	Thale cress	cytosol, extracellular, nucleus	42.7	35.43
CDY37994	Canola	cytosol	37.3	35.38
Bra033281.1-P	Field mustard	nucleus	38.92	34.95
CDY32441	Canola	cytosol	37.84	34.48
Bra032623.1-P	Field mustard	cytosol	37.84	34.48
KRH44608	Soybean	cytosol	29.19	33.13
KRH53598	Soybean	nucleus	31.89	30.26
AT1G01160.2	Thale cress	cytosol, nucleus, vacuole	37.3	30.13
TraesCS4D01G062900.1	Wheat	nucleus	35.14	28.89
CDY62048	Canola	cytosol, plastid	11.35	18.1

Protein Annotations

EnsemblPlants:TraesCS5D01G116800.1	EnsemblPlantsGene:TraesCS5D01G116800	GO:GO:0003674	GO:GO:0003713	InterPro:SS18_fam	PANTHER:PTHR23107
PANTHER:PTHR23107:SF8	PFAM:PF05030	SEG:seg	MapMan:15.5.52.2	:	:

Description

No Description!

Coordinates

chr5D:+:137970598..137976655

Molecular Weight (calculated)

19463.1 Da

IEP (calculated)

4.773

GRAVY (calculated)

-0.479

Length

185 amino acids

Sequence
(BLAST)

001: MQQAMPMPAA AAAPGMPPSA GLSTEQIQKY LDENKQLILA ILENQNLGKL AECAQYQAQL QKNLLYLAAI ADTQPQTSVS RPQMAPPSAS PGAGHYMSQV
101: PMFPPRTPLT PQQMQEQQLQ QQQAQMLPFA GQMVVRPGAV NGMPHAPQVE PAYAAGGASS EPSGTESHRS TGADNDGGSG LADQS

Best Arabidopsis Sequence Match ( AT4G00850.1 )
(BLAST)

001: MQQSPQMIPM VLPSFPPTNN ITTEQIQKYL DENKKLIMAI LENQNLGKLA ECAQYQALLQ KNLMYLAAIA DAQPQPPAAT LTSGAMTPQA MAPNPSSMQP
101: PPSYFMQQHQ AVGMAQQIPP GIFPPRGPLQ FGSPHQFLDP QQQLHQQAMQ GHMGIRPMGL NNNNGLQHQM HHHETALAAN NAGPNDASGG GKPDGTNMSQ
201: SGADGQGGSA ARHGGGDAKT EGK

Arabidopsis Description

GIF3GRF1-interacting factor 3 [Source:UniProtKB/Swiss-Prot;Acc:Q93VH6]
SUBAcon: [extracellular,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.