CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 4
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH47827	Soybean	cytosol	90.0	88.73
VIT_15s0048g02770.t01	Wine grape	nucleus	72.86	68.92
PGSC0003DMT400014095	Potato	cytosol, nucleus, vacuole	60.0	63.0
Solyc10g009280.2.1	Tomato	nucleus	53.33	56.0
EES17040	Sorghum	cytosol	44.29	50.0
Zm00001d023767_P001	Maize	cytosol	43.33	50.0
KRH44608	Soybean	cytosol	38.57	49.69
TraesCS5D01G116800.1	Wheat	cytosol	43.33	49.19
TraesCS5B01G114600.1	Wheat	cytosol	43.33	49.19
TraesCS5A01G107700.1	Wheat	cytosol	42.86	48.65
Zm00001d041753_P001	Maize	cytosol, extracellular, nucleus	42.38	48.63
HORVU5Hr1G028870.1	Barley	cytosol	42.38	47.85
TraesCS4B01G158300.1	Wheat	cytosol	44.29	47.69
GSMUA_Achr2P21910_001	Banana	cytosol	39.52	47.16
Os12t0496900-01	Rice	cytosol	40.48	45.95
TraesCS4A01G151200.1	Wheat	cytosol	42.86	45.0
Os11t0615200-01	Rice	extracellular	43.81	44.88
GSMUA_AchrUn_...	Banana	cytosol	42.86	44.12
EES10114	Sorghum	cytosol, extracellular, nucleus	44.29	43.46
Zm00001d048833_P001	Maize	extracellular	44.76	42.73
GSMUA_Achr11P...	Banana	cytosol	44.76	42.53
KRG92707	Soybean	nucleus	36.67	36.32
KRH34114	Soybean	nucleus	35.71	35.38
KRG97010	Soybean	nucleus	34.76	34.76
KRH53598	Soybean	nucleus	29.52	31.79
KRH68767	Soybean	cytosol	30.95	25.29

Protein Annotations

EntrezGene:100804074	MapMan:15.5.52.2	EMBL:ACUP02009828	EnsemblPlantsGene:GLYMA_16G020400	GO:GO:0003674	GO:GO:0003713
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:1903506
GO:GO:1903508	UniProt:I1MKE7	EnsemblPlants:KRH06396	ProteinID:KRH06396	ProteinID:KRH06396.1	ProteinID:KRH06397.1
ProteinID:KRH06398.1	ProteinID:KRH06399.1	PFAM:PF05030	PANTHER:PTHR23107	PANTHER:PTHR23107:SF0	InterPro:SS18_fam
UniParc:UPI0000F065F9	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr16:+:1854042..1858037

Molecular Weight (calculated)

22360.5 Da

IEP (calculated)

6.135

GRAVY (calculated)

-0.775

Length

210 amino acids

Sequence
(BLAST)

001: MQQTPPMIPM MPSFPPTNIT TEQIQKYLDE NKKLILAILD NQNLGKLAEC AQYQAQLQKN LMYLAAIADA QPQTPAMPPQ MAPHPAMQPG FYMQHPQAAA
101: AAMAQQQQQG MFPQKMPLQF GNPHQMQEQQ QQLHQQAIQG QMGLRPGGIN NGMHPMHNEG GNSGGPPSAT GPNDARGGSK QDASEAGTAG GDGQGSSAAA
201: HNSGDGEEAK

Best Arabidopsis Sequence Match ( AT4G00850.1 )
(BLAST)

001: MQQSPQMIPM VLPSFPPTNN ITTEQIQKYL DENKKLIMAI LENQNLGKLA ECAQYQALLQ KNLMYLAAIA DAQPQPPAAT LTSGAMTPQA MAPNPSSMQP
101: PPSYFMQQHQ AVGMAQQIPP GIFPPRGPLQ FGSPHQFLDP QQQLHQQAMQ GHMGIRPMGL NNNNGLQHQM HHHETALAAN NAGPNDASGG GKPDGTNMSQ
201: SGADGQGGSA ARHGGGDAKT EGK

Arabidopsis Description

GIF3GRF1-interacting factor 3 [Source:UniProtKB/Swiss-Prot;Acc:Q93VH6]
SUBAcon: [extracellular,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.