CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 3
endoplasmic reticulum 3
vacuole 3
plasma membrane 3
golgi 3
nucleus 3
plastid 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	nucleus
iPSORT:	plastid
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG88736
KRG88739
KRG96154
KRH05542
KRH05543
KRH06183
KRH30830
KRH32671
KRH47599
KRH67865

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G28640.1	KRG88736	AT2G22840.1	15326298
AT5G28640.1	KRG88739	AT2G22840.1	15326298
AT5G28640.1	KRH05542	AT2G22840.1	15326298
AT5G28640.1	KRH05543	AT2G22840.1	15326298
AT5G28640.1	KRH06183	AT3G13960.1	15960617
AT5G28640.1	KRH47599	AT3G13960.1	15960617
AT5G28640.1	KRG96154	AT3G52910.1	15960617
AT5G28640.1	KRH30830	AT3G52910.1	15960617
AT5G28640.1	KRH32671	AT3G52910.1	15960617
AT5G28640.1	KRH67865	AT3G52910.1	15960617
AT5G28640.1	KRG88736	AT4G37740.1	15326298
AT5G28640.1	KRG88739	AT4G37740.1	15326298
AT5G28640.1	KRH05542	AT4G37740.1	15326298
AT5G28640.1	KRH05543	AT4G37740.1	15326298

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG97010	Soybean	nucleus	52.92	64.76
KRH34114	Soybean	nucleus	51.75	62.74
KRG92707	Soybean	nucleus	51.75	62.74
VIT_14s0081g00200.t01	Wine grape	nucleus	50.97	58.74
Bra020616.1-P	Field mustard	nucleus	46.3	58.33
CDY33883	Canola	nucleus	46.3	58.05
AT5G28640.1	Thale cress	nucleus	45.53	55.71
Solyc04g009820.2.1	Tomato	nucleus	44.75	55.29
CDY00027	Canola	nucleus	43.58	55.17
CDY57020	Canola	nucleus	43.58	55.17
Bra036131.1-P	Field mustard	nucleus	43.19	54.68
Bra010002.1-P	Field mustard	nucleus	42.8	54.19
CDY05600	Canola	nucleus	42.8	53.4
PGSC0003DMT400065405	Potato	nucleus	43.97	52.8
PGSC0003DMT400002573	Potato	nucleus	43.58	50.22
Solyc11g006230.1.1	Tomato	nucleus	41.63	48.2
GSMUA_Achr10P...	Banana	nucleus	36.58	43.93
GSMUA_Achr8P20680_001	Banana	nucleus	36.19	42.86
TraesCS4A01G250600.1	Wheat	nucleus	33.85	38.5
Zm00001d033905_P001	Maize	nucleus	33.85	38.33
EER90925	Sorghum	nucleus	33.46	38.22
GSMUA_Achr9P10760_001	Banana	cytosol	35.02	37.5
Os03t0733600-01	Rice	nucleus	33.07	37.44
TraesCS4B01G064000.1	Wheat	nucleus	32.68	37.33
TraesCS4D01G062900.1	Wheat	nucleus	32.3	36.89
HORVU4Hr1G010610.1	Barley	cytosol, mitochondrion, nucleus	33.07	34.55
CDX86202	Canola	endoplasmic reticulum, extracellular	12.06	32.29
KRH06396	Soybean	cytosol	25.29	30.95
KRH47827	Soybean	cytosol	24.9	30.05
KRH44608	Soybean	cytosol	18.68	29.45
KRH53598	Soybean	nucleus	20.62	27.18

Protein Annotations

EMBL:ACUP02002123	EnsemblPlants:KRH68767	EnsemblPlantsGene:GLYMA_03G249000	EntrezGene:100801134	GO:GO:0003674	GO:GO:0003713
GO:GO:0006139	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:1903506
GO:GO:1903508	InterPro:SS18_fam	PANTHER:PTHR23107	PANTHER:PTHR23107:SF6	PFAM:PF05030	ProteinID:KRH68767
ProteinID:KRH68767.1	SEG:seg	UniParc:UPI0002964F0E	UniProt:K7KGX8	MapMan:15.5.52.2	:

Description

hypothetical protein

Coordinates

chr3:+:44522314..44525329

Molecular Weight (calculated)

27478.2 Da

IEP (calculated)

6.504

GRAVY (calculated)

-0.507

Length

257 amino acids

Sequence
(BLAST)

001: MFGSLFHFPH CLLHVLHQSF YDACFSQRYL RSHFLTFQIT MSESEYALFG DHKPSPYQNY LDENKSLILK IVESQNSGKL SECAENQARL QRNLMYLAAI
101: ADSQPQPPTM PGQYPPSGMM QQGAHYMQAQ QQTQQMSPQQ LMAARSSLLY AQQPYSALQQ QQAMHSALGS SSGLHMLQSE GSNVNVGSGS GSVGGGFPDL
201: VRGGGGGGGS TGEGLHSGGR GIMGSSKQEI GGSSEGRGGG SSEGGENLYL KIADDGN

Best Arabidopsis Sequence Match ( AT5G28640.1 )
(BLAST)

001: MQQHLMQMQP MMAGYYPSNV TSDHIQQYLD ENKSLILKIV ESQNSGKLSE CAENQARLQR NLMYLAAIAD SQPQPPSVHS QYGSAGGGMI QGEGGSHYLQ
101: QQQATQQQQM TQQSLMAARS SMLYAQQQQQ QQPYATLQHQ QLHHSQLGMS SSSGGGGSSG LHILQGEAGG FHDFGRGKPE MGSGGGGEGR GGSSGDGGET
201: LYLKSSDDGN

Arabidopsis Description

GIF1GRF1-interacting factor 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8L8A5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.