CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus, secretory
BaCelLo:	nucleus
iPSORT:	secretory
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
KRG92707
KRG97010
KRH34114
KRH68767

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G22840.1	KRG92707	AT5G28640.1	15326298
AT2G22840.1	KRG97010	AT5G28640.1	15326298
AT2G22840.1	KRH34114	AT5G28640.1	15326298
AT2G22840.1	KRH68767	AT5G28640.1	15326298
AT4G37740.1	KRG92707	AT5G28640.1	15326298
AT4G37740.1	KRG97010	AT5G28640.1	15326298
AT4G37740.1	KRH34114	AT5G28640.1	15326298
AT4G37740.1	KRH68767	AT5G28640.1	15326298

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG88736	Soybean	nucleus	90.17	90.32
KRH05543	Soybean	nucleus	90.5	89.16
KRG88739	Soybean	nucleus	88.17	89.06
VIT_18s0001g08650.t01	Wine grape	nucleus	63.17	62.75
GSMUA_Achr4P32310_001	Banana	nucleus	13.83	57.24
CDY55116	Canola	nucleus	25.67	54.61
PGSC0003DMT400012666	Potato	mitochondrion, nucleus	52.83	53.1
Solyc04g077510.2.1	Tomato	nucleus	51.67	52.1
CDY66422	Canola	nucleus	26.5	50.8
CDX83200	Canola	nucleus	33.0	50.25
Bra000575.1-P	Field mustard	nucleus	41.33	47.88
Bra017851.1-P	Field mustard	nucleus	35.67	47.87
CDY29584	Canola	nucleus	32.5	47.79
CDX72654	Canola	nucleus	34.83	47.29
CDX75672	Canola	nucleus	34.67	46.12
Bra011781.1-P	Field mustard	nucleus	34.5	45.9
AT2G22840.1	Thale cress	nucleus	40.5	45.85
CDX69322	Canola	nucleus	34.83	45.34
Os03t0729500-01	Rice	nucleus	34.0	44.74
AT4G37740.1	Thale cress	nucleus	38.17	42.8
Os12t0484900-01	Rice	nucleus, plastid	29.17	42.37
TraesCS4D01G059600.1	Wheat	nucleus	37.83	39.27
EER90936	Sorghum	nucleus	39.17	39.1
HORVU4Hr1G037480.5	Barley	nucleus	21.0	38.41
TraesCS4A01G255000.1	Wheat	nucleus	38.83	38.39
TraesCS4B01G060000.1	Wheat	nucleus	38.67	37.97
HORVU4Hr1G010080.2	Barley	nucleus	38.5	37.93
KXG28671	Sorghum	nucleus	22.67	36.66
CDY21475	Canola	nucleus	30.0	36.22
KRH30830	Soybean	nucleus	19.83	35.52
KRH27682	Soybean	nucleus	18.0	35.06
KRH32671	Soybean	nucleus	19.33	34.52
KRH67865	Soybean	nucleus	22.0	34.38
Zm00001d006338_P002	Maize	mitochondrion	15.83	34.17
KRG96154	Soybean	nucleus	22.0	34.02
KRH77798	Soybean	nucleus	17.83	33.65
KRH23984	Soybean	nucleus	18.5	33.33
KRH29333	Soybean	nucleus	18.5	32.55
EER93679	Sorghum	nucleus	22.0	30.34
HORVU4Hr1G003440.12	Barley	nucleus	20.33	29.9
Os03t0674700-01	Rice	nucleus	21.0	29.58
KRH12524	Soybean	nucleus	17.67	29.04
TraesCS4A01G291500.1	Wheat	nucleus	19.67	28.92
KRH37478	Soybean	nucleus	17.17	28.22
TraesCS4D01G020300.1	Wheat	nucleus	19.33	27.95
KRH02627	Soybean	nucleus	17.17	27.32
KRH19281	Soybean	nucleus	17.17	26.82
KRH64328	Soybean	nucleus	26.17	26.48
KRH53600	Soybean	nucleus	25.33	26.3
KRH76368	Soybean	nucleus	14.67	26.27
Zm00001d002049_P001	Maize	cytosol, plastid	4.17	25.51
KRH39656	Soybean	nucleus, plastid	14.17	25.22
KRH47599	Soybean	nucleus	13.83	24.06
KRH06183	Soybean	nucleus	14.0	23.33
KRH76298	Soybean	nucleus	15.0	19.65
KRH65240	Soybean	nucleus	15.0	19.23

Protein Annotations

EntrezGene:100818860	MapMan:15.5.52.1	EMBL:ACUP02010752	EnsemblPlantsGene:GLYMA_17G232600	GO:GO:0000166	GO:GO:0003674
GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0032502	InterPro:GRF	InterPro:Gln-Leu-Gln_QLQ	InterPro:IPR014977	InterPro:IPR014978
UniProt:K7MNJ4	EnsemblPlants:KRH05542	ProteinID:KRH05542	ProteinID:KRH05542.1	PFAM:PF08879	PFAM:PF08880
PFscan:PS51666	PFscan:PS51667	PANTHER:PTHR31602	PANTHER:PTHR31602:SF22	SMART:SM00951	UniParc:UPI000233E4E0
InterPro:WRC_dom	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr17:+:38792970..38797913

Molecular Weight (calculated)

65634.0 Da

IEP (calculated)

7.954

GRAVY (calculated)

-0.739

Length

600 amino acids

Sequence
(BLAST)

001: MDLGVVGLEG VVGSESGCVF GSSLVSDPET KHKWYGSGLL KQERSAIATE DDEWRISKVA KTDHDMSSAS KAMLFQQRNN SLLRSNNATL FSDGHHQSQM
101: LSFSSPKSDS LLIDKASSNA TLPFSSHQLS SYTRNTGYNS GSISMHGALA SVRGPFTPSQ WMELEHQALI YKYITANVPV PTHLLIPIRK ALDSVGFCNF
201: SAGLLRPNSL GWGGFHLGFS NNTDPEPGRC RRTDGKKWRC SRDAVVDQKY CERHMNRGRH RSRKPVEGQS GHALTTTTSN TPNASSNSVV PGNNNNTFAH
301: NNVHHPIPPH SSPVNTITRM FTSNKENNNS TSERMQDPAL PMLPPTLELK PKENNPFMIH KHQIPSDEYS SRNNNEFGLV TSDSLLNPSE KRSFTSSQKN
401: DSSESQQQHS LRHFIDDSPK PQSNHHHRSS SIWPELDNMQ SDRTQLSISI PISSSDHFMS FTTSLPSNEK LTLSPLRLSR ELDPIQMGLG VGSAPNEANT
501: RQANWIPITW ESSMGGPLGE VLNLSNNNNS NASDQCGKNN NNTSALNLMK DGWDNNPPSG SSPTGVLQKS AFGSLSNSSA GSSPRGAENN KEGATLCNAL

Best Arabidopsis Sequence Match ( AT2G22840.1 )
(BLAST)

001: MDLGVRVSGH ETVSSPGQTE LGSGFSNKQE RSGFDGEDCW RSSKLSRTST DGFSSSPASA KTLSFHQGIP LLRSTTINDP RKGQEHMLSF SSASGKSDVS
101: PYLQYCRNSG YGLGGMMNTS NMHGNLLTGV KGPFSLTQWA ELEQQALIYK YITANVPVPS SLLLSLKKSF FPYGSLPPNS FGWGSFHLGF SGGNMDPEPG
201: RCRRTDGKKW RCSRDAVPDQ KYCERHINRG RHRSRKPVEG QNGHNTNAAA AASAAAASTA AAVSKAAAGT SAVAMRGSDN NNSLAAAVGT QHHTNNQSTD
301: SLANRVQNSR GASVFPATMN LQSKETHPKQ SNNPFEFGLI SSDSLLNPSH KQASYATSSK GFGSYLDFGN QAKHAGNHNN VDSWPEELKS DWTQLSMSIP
401: MAPSSPVQDK LALSPLRLSR EFDPAIHMGL GVNTEFLDPG KKTNNWIPIS WGNNNSMGGP LGEVLNSTTN SPKFGSSPTG VLQKSTFGSL SNSSSASSTI
501: IGDNNNKNGD GKDPLGPTTL MNTSATAPSL

Arabidopsis Description

GRF1Growth-regulating factor 1 [Source:UniProtKB/Swiss-Prot;Acc:O81001]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.