Factsheet for PGSC0003DMT400012666

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	mitochondrion, nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

mitochondrion: 24351685

msms PMID: 24351685 doi

F Salvato, JF Havelund, M Chen, RS Rao, A Rogowska-Wrzesinska, ON Jensen, DR Gang, JJ Thelen, IM Møller

Department of Biochemistry and Interdisciplinary Plant Group, University of Missouri, Columbia, Missouri 65211.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g077510.2.1	Tomato	nucleus	95.81	96.13
VIT_18s0001g08650.t01	Wine grape	nucleus	63.15	62.42
GSMUA_Achr4P32310_001	Banana	nucleus	13.23	54.48
KRH05542	Soybean	nucleus	53.1	52.83
KRG88736	Soybean	nucleus	52.26	52.09
KRG88739	Soybean	nucleus	51.09	51.35
KRH05543	Soybean	nucleus	51.26	50.25
Os03t0729500-01	Rice	nucleus	32.83	42.98
Os12t0484900-01	Rice	nucleus, plastid	29.65	42.86
PGSC0003DMT400055151	Potato	nucleus	41.71	41.57
KXG28671	Sorghum	nucleus	23.62	38.01
HORVU4Hr1G037480.5	Barley	nucleus	20.77	37.8
TraesCS4D01G059600.1	Wheat	nucleus	36.35	37.54
EER90936	Sorghum	nucleus	36.68	36.44
TraesCS4A01G255000.1	Wheat	nucleus	36.52	35.91
TraesCS4B01G060000.1	Wheat	nucleus	36.52	35.68
HORVU4Hr1G010080.2	Barley	nucleus	36.18	35.47
PGSC0003DMT400047580	Potato	nucleus	19.77	33.43
PGSC0003DMT400009997	Potato	nucleus	6.7	32.79
Zm00001d006338_P002	Maize	mitochondrion	15.24	32.73
PGSC0003DMT400075563	Potato	nucleus	18.59	31.71
PGSC0003DMT400079338	Potato	nucleus	16.58	31.13
PGSC0003DMT400072628	Potato	nucleus	19.93	30.43
TraesCS4A01G291500.1	Wheat	nucleus	20.6	30.15
HORVU4Hr1G003440.12	Barley	nucleus	20.27	29.66
Os03t0674700-01	Rice	nucleus	21.11	29.58
TraesCS4D01G020300.1	Wheat	nucleus	20.27	29.16
EER93679	Sorghum	nucleus	20.94	28.74
Zm00001d002049_P001	Maize	cytosol, plastid	4.52	27.55
PGSC0003DMT400033847	Potato	nucleus	12.06	26.67
PGSC0003DMT400008352	Potato	nucleus	18.59	24.72
PGSC0003DMT400033246	Potato	nucleus	16.75	23.81
PGSC0003DMT400031893	Potato	nucleus	15.58	22.04

Protein Annotations

EntrezGene:102582107	MapMan:15.5.52.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0032502
InterPro:GRF	InterPro:Gln-Leu-Gln_QLQ	InterPro:IPR014977	InterPro:IPR014978	UniProt:M1A1L2	PFAM:PF08879
PFAM:PF08880	EnsemblPlantsGene:PGSC0003DMG400004942	PGSC:PGSC0003DMG400004942	EnsemblPlants:PGSC0003DMT400012666	PFscan:PS51666	PFscan:PS51667
PANTHER:PTHR31602	PANTHER:PTHR31602:SF22	SMART:SM00951	UniParc:UPI000295C9BE	InterPro:WRC_dom	RefSeq:XP_006356839.1
SEG:seg	:	:	:	:	:

Description

UPA17 [Source:PGSC_GENE;Acc:PGSC0003DMG400004942]

Coordinates

chr4:+:66640793..66644140

Molecular Weight (calculated)

64331.6 Da

IEP (calculated)

8.387

GRAVY (calculated)

-0.660

Length

597 amino acids

Sequence
(BLAST)

001: MDFGGLDSGG GGVICSDNTS STMFVASAET KQKWYGSGGF NKHERSSVTE DEWNKESKLA KTSDDFSSSK ATMMFQQLPI SHENQQMLSF STPNSQNHVT
101: MPYYNQHPSS AFARNTSGYG SGALSAGNMH GLIAGVKGPF TPSQWMELEH QALIYKYITA NVPIPPYLLN PIRKALESAG FTTFAGLRPN ALGWGAFHLG
201: FSNSNDPEPG RCRRTDGKKW RCSRDAVADQ KYCERHMNRG RHRSRKPVEG QTGNSASGNN TGATTTSAKL TNMSSAASAA LASGGGAAAS NTLNLSHHNQ
301: LSNLQPAGTN LSTTSPYLER SYTAKENFGE RYSDTKGSSV VSPSVKEPQY SNQKAQNPYG LTSRAEFGLV CADSLINPLN KNSSLVNCRG YVNSDVRDQE
401: RKLQHHPLRQ FMDELPKTQS DQSNVSWPDI DLQSDPTQLS ISIPLVTSDF MSSTSSPAND KLTASPHRSR EHEAIQMGLG IGTIISEHNQ RQGSWIPISW
501: ESSLGGPLGE VLHSTNSSSG DCKNKSALNL MTEGWDRSPR MGSSPTGVLQ KSSFGSLSNS SAGSSPRAEH SKTTNEGSSL CNGLLGTTLM NPTLPAM

Best Arabidopsis Sequence Match ( AT2G22840.1 )
(BLAST)

001: MDLGVRVSGH ETVSSPGQTE LGSGFSNKQE RSGFDGEDCW RSSKLSRTST DGFSSSPASA KTLSFHQGIP LLRSTTINDP RKGQEHMLSF SSASGKSDVS
101: PYLQYCRNSG YGLGGMMNTS NMHGNLLTGV KGPFSLTQWA ELEQQALIYK YITANVPVPS SLLLSLKKSF FPYGSLPPNS FGWGSFHLGF SGGNMDPEPG
201: RCRRTDGKKW RCSRDAVPDQ KYCERHINRG RHRSRKPVEG QNGHNTNAAA AASAAAASTA AAVSKAAAGT SAVAMRGSDN NNSLAAAVGT QHHTNNQSTD
301: SLANRVQNSR GASVFPATMN LQSKETHPKQ SNNPFEFGLI SSDSLLNPSH KQASYATSSK GFGSYLDFGN QAKHAGNHNN VDSWPEELKS DWTQLSMSIP
401: MAPSSPVQDK LALSPLRLSR EFDPAIHMGL GVNTEFLDPG KKTNNWIPIS WGNNNSMGGP LGEVLNSTTN SPKFGSSPTG VLQKSTFGSL SNSSSASSTI
501: IGDNNNKNGD GKDPLGPTTL MNTSATAPSL

Arabidopsis Description

GRF1Growth-regulating factor 1 [Source:UniProtKB/Swiss-Prot;Acc:O81001]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.