Factsheet for PGSC0003DMT400033246

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g091540.1.1	Tomato	nucleus	95.24	95.24
PGSC0003DMT400009997	Potato	nucleus	9.05	31.15
PGSC0003DMT400047580	Potato	nucleus	22.14	26.35
PGSC0003DMT400075563	Potato	nucleus	21.9	26.29
PGSC0003DMT400079338	Potato	nucleus	19.76	26.1
PGSC0003DMT400072628	Potato	nucleus	22.38	24.04
PGSC0003DMT400033847	Potato	nucleus	14.29	22.22
VIT_15s0048g01740.t01	Wine grape	nucleus, plasma membrane	17.86	18.66
PGSC0003DMT400012666	Potato	mitochondrion, nucleus	23.81	16.75
PGSC0003DMT400008352	Potato	nucleus	17.86	16.7
PGSC0003DMT400031893	Potato	nucleus	16.67	16.59
PGSC0003DMT400055151	Potato	nucleus	22.14	15.53

Protein Annotations

EntrezGene:102601540	MapMan:15.5.52.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0032502
InterPro:GRF	InterPro:Gln-Leu-Gln_QLQ	InterPro:IPR014977	InterPro:IPR014978	UniProt:M1AYU1	PFAM:PF08879
PFAM:PF08880	EnsemblPlantsGene:PGSC0003DMG400012767	PGSC:PGSC0003DMG400012767	EnsemblPlants:PGSC0003DMT400033246	PFscan:PS51666	PFscan:PS51667
PANTHER:PTHR31602	PANTHER:PTHR31602:SF2	SMART:SM00951	UniParc:UPI00029612E3	InterPro:WRC_dom	RefSeq:XP_006339771.1
SEG:seg	:	:	:	:	:

Description

Growth-regulating factor 10 [Source:PGSC_GENE;Acc:PGSC0003DMG400012767]

Coordinates

chr1:+:70939165..70942478

Molecular Weight (calculated)

46610.6 Da

IEP (calculated)

9.334

GRAVY (calculated)

-0.738

Length

420 amino acids

Sequence
(BLAST)

001: MQLHLFSATP LSLSGKGKED EIKKKEGSPP CIELSLGYGS SSHVVEEDEK DAKSSNSLFT AAQFQELQLQ AVIFKYLVSG LPVPFHLFFI IWNSVSSSLG
101: DGGIYKLYPT LGRFDYTSMT DPEPGRCRRT DGKKWRCKRD VIPGQKYCGQ HVHRGRRSRK PVEASEHVMR SDDTNIISKI TKLYASSDDP GSKCAPASSK
201: TSCLSSTSRS NQYNSIEDSS VKPRFINSGN GSEKQDNYMI CNRKDITTSV RTPSFISGDN ADSKNIDFNR ISPSKTNQKQ NCGEARKHGA LVPIFGLSTK
301: SDLQHSIGSE ADQQRCRRSD GKKWRCSKTV VPCQKYCETH MHRGANRKRV ASVSVVVPPS KPPSYRFCPP ENDGTRRNLN TSLSIYTIPG RQNITDDESN
401: SNSISDATTI TDEIPAFVSH

Best Arabidopsis Sequence Match ( AT2G45480.3 )
(BLAST)

001: MKMQSPKMEQ EEVEEERMRN KWPWMKAAQL MEFRMQALVY RYIEAGLRVP HHLVVPIWNS LALSSSSNYN YHSSSLLSNK GVTHIDTLET EPTRCRRTDG
101: KKWRCSNTVL LFEKYCERHM HRGRKRSRKL VESSSEVASS STKYDNTYGL DRYNESQSHL HGTISGSSNA QVVTIASLPS ARSCENVIRP SLVISEFTNK
201: SVSHGRKNME MSYDDFINEK EASMCVGVVP LQGDESKPSV QKFFPEVSDK CLEAAKFSSN RKNDIIARSR EWKNMNVNGG LFHGIHFSPD TVLQERGCFR
301: LQGVETDNEP GRCRRTDGKK WRCSKDVLSG QKYCDKHMHR GMKKKHPVDT TNSHENAGFS PLTVETAVRS VVPCKDGDDQ KHSVSVMGIT LPRVSDEKST
401: SSCSTDTTIT DTALRGEDDD EEYLSLFSPG V

Arabidopsis Description

GRF9Growth-regulating factor 9 [Source:UniProtKB/Swiss-Prot;Acc:Q8S9M3]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.