Factsheet for TraesCS4D01G059600.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
nucleus 2
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, nucleus
iPSORT:	secretory
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS4A01G250600.1
TraesCS4B01G064000.1
TraesCS4D01G062900.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT2G22840.1	TraesCS4A01G250600.1	AT5G28640.1	15326298
AT2G22840.1	TraesCS4B01G064000.1	AT5G28640.1	15326298
AT2G22840.1	TraesCS4D01G062900.1	AT5G28640.1	15326298
AT4G37740.1	TraesCS4A01G250600.1	AT5G28640.1	15326298
AT4G37740.1	TraesCS4B01G064000.1	AT5G28640.1	15326298
AT4G37740.1	TraesCS4D01G062900.1	AT5G28640.1	15326298

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS4A01G255000.1	Wheat	nucleus	97.4	92.75
TraesCS4B01G060000.1	Wheat	nucleus	97.58	92.31
HORVU4Hr1G010080.2	Barley	nucleus	93.77	89.0
Os03t0729500-01	Rice	nucleus	61.59	78.07
EER90936	Sorghum	nucleus	73.53	70.72
Zm00001d033876_P004	Maize	nucleus	71.45	69.65
Zm00001d013346_P001	Maize	nucleus	66.09	65.3
GSMUA_Achr3P15140_001	Banana	nucleus	38.41	45.49
GSMUA_Achr1P27000_001	Banana	nucleus	33.05	45.05
GSMUA_Achr7P27480_001	Banana	nucleus	46.37	44.15
GSMUA_Achr8P04970_001	Banana	nucleus	43.94	43.72
CDY55116	Canola	nucleus	20.59	42.2
VIT_18s0001g08650.t01	Wine grape	nucleus	43.6	41.72
CDX83200	Canola	nucleus	26.99	39.59
CDY66422	Canola	nucleus	20.93	38.66
KRG88739	Soybean	nucleus	39.45	38.38
KRH05542	Soybean	nucleus	39.27	37.83
KRH05543	Soybean	nucleus	39.62	37.6
KRG88736	Soybean	nucleus	38.93	37.56
TraesCS6D01G238900.1	Wheat	nucleus	13.84	37.21
GSMUA_AchrUn_...	Banana	nucleus	21.8	36.95
PGSC0003DMT400012666	Potato	mitochondrion, nucleus	37.54	36.35
Solyc04g077510.2.1	Tomato	nucleus	36.85	35.8
Bra000575.1-P	Field mustard	nucleus	32.01	35.71
AT2G22840.1	Thale cress	nucleus	32.35	35.28
CDX72654	Canola	nucleus	26.64	34.84
CDX75672	Canola	nucleus	26.99	34.59
CDX69322	Canola	nucleus	27.51	34.49
Bra011781.1-P	Field mustard	nucleus	26.82	34.37
Bra017851.1-P	Field mustard	nucleus	26.3	34.0
CDY29584	Canola	nucleus	23.88	33.82
TraesCS2D01G395900.1	Wheat	nucleus	12.8	32.31
AT4G37740.1	Thale cress	nucleus	29.76	32.15
TraesCS7D01G166400.1	Wheat	nucleus	15.4	27.81
TraesCS7D01G044200.1	Wheat	nucleus	17.47	27.45
TraesCS4D01G020300.1	Wheat	nucleus	19.03	26.51
CDY21475	Canola	nucleus	22.15	25.75
TraesCS6D01G245300.1	Wheat	plastid	18.17	25.67
TraesCS2D01G435200.1	Wheat	nucleus, plastid	17.13	25.32
TraesCS6D01G163900.1	Wheat	plastid	10.03	23.48
TraesCS2D01G246600.1	Wheat	nucleus	10.21	22.35
TraesCS6D01G315700.1	Wheat	nucleus	15.92	22.22
GSMUA_Achr8P26530_001	Banana	nucleus	44.98	18.13

Protein Annotations

MapMan:15.5.52.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0032502	InterPro:GRF
InterPro:Gln-Leu-Gln_QLQ	InterPro:IPR014977	InterPro:IPR014978	PFAM:PF08879	PFAM:PF08880	PFscan:PS51666
PFscan:PS51667	PANTHER:PTHR31602	PANTHER:PTHR31602:SF40	SMART:SM00951	EnsemblPlantsGene:TraesCS4D01G059600	EnsemblPlants:TraesCS4D01G059600.1
InterPro:WRC_dom	SEG:seg	:	:	:	:

Description

No Description!

Coordinates

chr4D:+:35477057..35480997

Molecular Weight (calculated)

61165.5 Da

IEP (calculated)

7.061

GRAVY (calculated)

-0.450

Length

578 amino acids

Sequence
(BLAST)

001: MDLGGVLMAA ADAGVGGGDL GMLGSRLLKH GRGNEADEHG WGGGRPASKQ ARVAGDSDAV SEAVKAAAPY LLGTCSPGHG REKMLSFSSS QPASCPSAAQ
101: AALPLYYGTP ASCSGLSSVR GPFTPSQWME LEHQALIYKY LAANIAVPHN LVVPIRRSVT SLYPSAYFGS STLGWGPFQL GYSGSADLEP GRCRRTDGKK
201: WRCSRDAVAD QKYCERHMNR GRHRSRKHVE GQPGHAAKAM PATAAAAAQP GALATGGGGG APAGAAICHE QQPLKNYAAS TIDPCSLQYN REMVSKQQHE
301: CEQVQDSDTL SMLTSMSARN TNAGSMFPFS KEHHNHNPFE VTSSRPDYGL VSSDSLMSSP HSSLENVNLL TSQRALSSEQ QSSLSLQHFA DWPRTPSQQG
401: QGGGLSWPDA EDMQAHQRTQ LSVSAVPMAS SDLSSASTSP IHEKLMLSPL KLSREYSPIG LSVAATAAVA KDEGEANWMP MFRDSSMGGP LGEALNKNNG
501: GNMEAKSYLS ASLNLMTDAW DSSPLESSPV GVLQRTAFGS VSSSTGSSPR QEYHGVYDGN PRDDLGSIVV NHPSIRLM

Best Arabidopsis Sequence Match ( AT2G22840.1 )
(BLAST)

001: MDLGVRVSGH ETVSSPGQTE LGSGFSNKQE RSGFDGEDCW RSSKLSRTST DGFSSSPASA KTLSFHQGIP LLRSTTINDP RKGQEHMLSF SSASGKSDVS
101: PYLQYCRNSG YGLGGMMNTS NMHGNLLTGV KGPFSLTQWA ELEQQALIYK YITANVPVPS SLLLSLKKSF FPYGSLPPNS FGWGSFHLGF SGGNMDPEPG
201: RCRRTDGKKW RCSRDAVPDQ KYCERHINRG RHRSRKPVEG QNGHNTNAAA AASAAAASTA AAVSKAAAGT SAVAMRGSDN NNSLAAAVGT QHHTNNQSTD
301: SLANRVQNSR GASVFPATMN LQSKETHPKQ SNNPFEFGLI SSDSLLNPSH KQASYATSSK GFGSYLDFGN QAKHAGNHNN VDSWPEELKS DWTQLSMSIP
401: MAPSSPVQDK LALSPLRLSR EFDPAIHMGL GVNTEFLDPG KKTNNWIPIS WGNNNSMGGP LGEVLNSTTN SPKFGSSPTG VLQKSTFGSL SNSSSASSTI
501: IGDNNNKNGD GKDPLGPTTL MNTSATAPSL

Arabidopsis Description

GRF1Growth-regulating factor 1 [Source:UniProtKB/Swiss-Prot;Acc:O81001]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.