Factsheet for TraesCS6D01G163900.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 5
cytosol 1
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid, secretory
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6B01G204300.1	Wheat	plastid	89.07	90.91
TraesCS6A01G174800.1	Wheat	cytosol, mitochondrion, nucleus	92.71	72.7
HORVU6Hr1G035720.1	Barley	cytosol, mitochondrion, nucleus	89.88	70.7
TraesCS6D01G238900.1	Wheat	nucleus	14.98	17.21
TraesCS2D01G395900.1	Wheat	nucleus	14.98	16.16
TraesCS2D01G246600.1	Wheat	nucleus	14.57	13.64
TraesCS7D01G044200.1	Wheat	nucleus	18.62	12.5
TraesCS6D01G245300.1	Wheat	plastid	19.84	11.98
TraesCS7D01G166400.1	Wheat	nucleus	15.38	11.88
TraesCS4D01G020300.1	Wheat	nucleus	19.84	11.81
TraesCS2D01G435200.1	Wheat	nucleus, plastid	18.62	11.76
TraesCS4D01G059600.1	Wheat	nucleus	23.48	10.03
TraesCS6D01G315700.1	Wheat	nucleus	16.19	9.66

Protein Annotations

EnsemblPlants:TraesCS6D01G163900.1	EnsemblPlantsGene:TraesCS6D01G163900	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634
GO:GO:0006139	GO:GO:0006351	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987
GO:GO:0032502	InterPro:GRF	InterPro:IPR014977	InterPro:WRC_dom	PANTHER:PTHR31602	PFAM:PF08879
PFscan:PS51667	SEG:seg	MapMan:15.5.52.1	:	:	:

Description

No Description!

Coordinates

chr6D:-:143082184..143082927

Molecular Weight (calculated)

26540.0 Da

IEP (calculated)

7.974

GRAVY (calculated)

-0.539

Length

247 amino acids

Sequence
(BLAST)

001: MAASSPIPSY LLFSNINPAA AAAAPTQAPS SCYCCYNTPL LVHHYQAQQA AQMSMLLQCM QQAVARRRCG RTDGKKWRCA RDAEPDQKYC QRHLNRVGRT
101: RPPPPARKQQ HQHAAAAVDA HHRDRNKTAM TASAATHTSH GNKSSGNAMR EDDDDYSRGL LDFTGGVCLP EQRENRLSLN YDNIAELYCN RQVAATPTAP
201: ASAAASATAM DDDAIDHGAA ATWVGIGGPL GEALGLAVEI QWPAGST

Best Arabidopsis Sequence Match ( AT4G37740.1 )
(BLAST)

001: MDIGVHVLGS VTSNENESLG LKELIGTKQD RSGFIGEDCL QRSLKLARTT TRAEEEENLS SSVAAAYCKT MSFHQGIPLM RSASPLSSDS RRQEQMLSFS
101: DKPDALDFSK YVGLDNSSNN KNSLSPFLHQ IPPPSYFRSS GGYGSGGMMM NMSMQGNFTG VKGPFTLTQW AELEQQALIY KYITANVPVP SSLLISIKKS
201: FYPYGSLPPS SFGWGTFHLG FAGGNMDPEP GRCRRTDGKK WRCSRDAVPD QKYCERHINR GRHRSRKPVE VQSGQNQTAA AASKAVTTPQ QPVVAGNTNR
301: SNARASSNRS LAIGSQYINP STESLPNNRG VSIYPSTVNL QPKESPVIHQ KHRNNNNPFE FGHISSDSLL NPNTAKTYGS SFLDFSSNQE KHSGNHNHNS
401: WPEELTSDWT QLSMSIPIAS SSPSSTHNNN NAQEKTTLSP LRLSRELDLS IQTDETTIEP TVKKVNTWIP ISWGNSLGGP LGEVLNSTTN SPTFGSSPTG
501: VLQKSTFCSL SNNSSVSSPI AENNRHNGDY FHYTT

Arabidopsis Description

GRF2GRF2 [Source:UniProtKB/TrEMBL;Acc:A0A178UXW8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.