Factsheet for Bra011781.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra010002.1-P
Bra020616.1-P
Bra036131.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G37740.1	Bra010002.1-P	AT5G28640.1	15326298
AT4G37740.1	Bra020616.1-P	AT5G28640.1	15326298
AT4G37740.1	Bra036131.1-P	AT5G28640.1	15326298

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX75672	Canola	nucleus	99.56	99.56
CDX69322	Canola	nucleus	95.79	93.71
Bra017851.1-P	Field mustard	nucleus	72.06	72.71
AT4G37740.1	Thale cress	nucleus	80.49	67.85
Bra000575.1-P	Field mustard	nucleus	63.86	55.6
GSMUA_Achr4P32310_001	Banana	nucleus	14.19	44.14
VIT_00s0494g00010.t01	Wine grape	nucleus	48.56	36.68
Zm00001d007465_P001	Maize	nucleus	24.39	35.26
KRG88739	Soybean	nucleus	45.9	34.85
KRH05542	Soybean	nucleus	45.9	34.5
KRG88736	Soybean	nucleus	45.68	34.39
Solyc02g092070.2.1	Tomato	nucleus	43.02	34.15
KRH05543	Soybean	nucleus	46.12	34.15
PGSC0003DMT400055151	Potato	nucleus	45.23	34.06
GSMUA_Achr3P15140_001	Banana	nucleus	36.81	34.02
HORVU4Hr1G037480.5	Barley	nucleus	24.17	33.23
Os12t0484900-01	Rice	nucleus, plastid	29.71	32.45
GSMUA_AchrUn_...	Banana	nucleus	24.39	32.26
GSMUA_Achr1P27000_001	Banana	nucleus	30.16	32.08
KXG28671	Sorghum	nucleus	26.16	31.81
Os03t0729500-01	Rice	nucleus	31.49	31.14
GSMUA_Achr8P04970_001	Banana	nucleus	38.36	29.78
Bra022667.1-P	Field mustard	nucleus	22.17	28.82
GSMUA_Achr7P27480_001	Banana	nucleus	37.69	28.01
EER90936	Sorghum	nucleus	37.25	27.95
Zm00001d033396_P003	Maize	nucleus	27.05	27.85
Zm00001d006338_P002	Maize	mitochondrion	17.07	27.7
HORVU4Hr1G003440.12	Barley	nucleus	25.06	27.7
Zm00001d033876_P004	Maize	nucleus	36.36	27.66
TraesCS4D01G059600.1	Wheat	nucleus	34.37	26.82
Bra005268.1-P	Field mustard	nucleus	23.06	26.8
EER93679	Sorghum	nucleus	25.72	26.67
Bra023066.1-P	Field mustard	nucleus	21.73	26.63
TraesCS4A01G291500.1	Wheat	nucleus	23.95	26.47
HORVU4Hr1G010080.2	Barley	nucleus	35.7	26.44
TraesCS4A01G255000.1	Wheat	nucleus	35.48	26.36
Os03t0674700-01	Rice	nucleus	24.61	26.06
TraesCS4B01G060000.1	Wheat	nucleus	35.26	26.02
Zm00001d013346_P001	Maize	nucleus	33.7	25.98
TraesCS4D01G020300.1	Wheat	nucleus	23.73	25.78
Bra028541.1-P	Field mustard	nucleus	20.84	25.68
Zm00001d013555_P001	Maize	nucleus	24.39	25.23
Bra006956.1-P	Field mustard	nucleus	21.29	25.13
Bra017240.1-P	Field mustard	nucleus	19.07	23.76
Bra013767.1-P	Field mustard	nucleus	19.29	23.45
Bra019244.1-P	Field mustard	nucleus	18.85	22.67
Bra001532.1-P	Field mustard	nucleus	15.96	19.83
Bra015184.1-P	Field mustard	nucleus	17.52	19.75
Bra027384.1-P	Field mustard	nucleus	16.41	18.93
Zm00001d002049_P001	Maize	cytosol, plastid	3.99	18.37
Bra019640.1-P	Field mustard	nucleus	19.29	16.17
Bra039334.1-P	Field mustard	nucleus	14.41	15.26
Bra021521.1-P	Field mustard	cytosol	12.64	13.87
GSMUA_Achr8P26530_001	Banana	nucleus	39.69	12.48

Protein Annotations

MapMan:15.5.52.1	ProteinID:AFQ22738	ProteinID:AFQ22738.1	EnsemblPlantsGene:Bra011781	EnsemblPlants:Bra011781.1	EnsemblPlants:Bra011781.1-P
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0032502	InterPro:GRF	InterPro:Gln-Leu-Gln_QLQ
InterPro:IPR014977	InterPro:IPR014978	EMBL:JN698987	UniProt:M4D5M4	PFAM:PF08879	PFAM:PF08880
PFscan:PS51666	PFscan:PS51667	PANTHER:PTHR31602	PANTHER:PTHR31602:SF22	SMART:SM00951	UniParc:UPI0002546420
InterPro:WRC_dom	SEG:seg	:	:	:	:

Description

AT4G37740 (E=2e-094) AtGRF2 | AtGRF2 (GROWTHREGULATING FACTOR 2); transcription activator

Coordinates

chrA01:+:585376..587110

Molecular Weight (calculated)

49440.7 Da

IEP (calculated)

9.578

GRAVY (calculated)

-0.652

Length

451 amino acids

Sequence
(BLAST)

001: MDLGSVTGNV NGSPSLKELR ESKQDRSGFD GEDCLQQSSK LARTIAEDKH LPSSYAAAYS RPMSFHQGIP LARSASLLSS DSRRQEHMLS FSDKPEAFDF
101: SKYVGLDNNK NSLSPFLHQL PPPYCRTPGG GYGSGGMMMS MQGKGPFTLT QWAELEQQAL IYKYITANVP VPSSLLISIQ KSFYPYRSFP PSSFGWGTFH
201: LGFAGGKMDP EPGRCRRTDG KKWRCSKDAV PDQKYCERHI NRGRHRSRKP VEVQPGQTAA SKAVASRNTA SQSPNNRVQN VIYPSTVNLP PKEQRNNNNS
301: SFGFGHVTSP SLLTSSYLDF SINQNKPEEL KSDWTQLSMS IPVTSSSPSS TAQDKTALSP LRLDLPIQSQ QETLEAARKV NTWIPISWGN SLGGPLGEVL
401: NSTTSSPTLG SSPTGVLQKS TFCSLSNSSS VTSPVADNNR NNNVDYFHYT T

Best Arabidopsis Sequence Match ( AT4G37740.1 )
(BLAST)

001: MDIGVHVLGS VTSNENESLG LKELIGTKQD RSGFIGEDCL QRSLKLARTT TRAEEEENLS SSVAAAYCKT MSFHQGIPLM RSASPLSSDS RRQEQMLSFS
101: DKPDALDFSK YVGLDNSSNN KNSLSPFLHQ IPPPSYFRSS GGYGSGGMMM NMSMQGNFTG VKGPFTLTQW AELEQQALIY KYITANVPVP SSLLISIKKS
201: FYPYGSLPPS SFGWGTFHLG FAGGNMDPEP GRCRRTDGKK WRCSRDAVPD QKYCERHINR GRHRSRKPVE VQSGQNQTAA AASKAVTTPQ QPVVAGNTNR
301: SNARASSNRS LAIGSQYINP STESLPNNRG VSIYPSTVNL QPKESPVIHQ KHRNNNNPFE FGHISSDSLL NPNTAKTYGS SFLDFSSNQE KHSGNHNHNS
401: WPEELTSDWT QLSMSIPIAS SSPSSTHNNN NAQEKTTLSP LRLSRELDLS IQTDETTIEP TVKKVNTWIP ISWGNSLGGP LGEVLNSTTN SPTFGSSPTG
501: VLQKSTFCSL SNNSSVSSPI AENNRHNGDY FHYTT

Arabidopsis Description

GRF2GRF2 [Source:UniProtKB/TrEMBL;Acc:A0A178UXW8]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.