Factsheet for Bra019640.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	mitochondrion, nucleus
BaCelLo:	nucleus
ChloroP:	plastid
MultiLoc:	nucleus
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra010002.1-P
Bra020616.1-P
Bra036131.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G52910.1	Bra010002.1-P	AT5G28640.1	15960617
AT3G52910.1	Bra020616.1-P	AT5G28640.1	15960617
AT3G52910.1	Bra036131.1-P	AT5G28640.1	15960617

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX76249	Canola	nucleus	70.07	92.18
Bra006956.1-P	Field mustard	nucleus	57.06	80.37
Bra028541.1-P	Field mustard	nucleus	53.35	78.42
AT3G52910.1	Thale cress	nucleus	54.46	77.11
Bra023066.1-P	Field mustard	nucleus	42.94	62.77
Bra005268.1-P	Field mustard	nucleus	44.61	61.86
Bra017240.1-P	Field mustard	nucleus	41.26	61.33
KRH30830	Soybean	nucleus	30.48	48.96
KRH32671	Soybean	nucleus	30.48	48.81
KRH67865	Soybean	nucleus	33.46	46.88
KRG96154	Soybean	nucleus	33.64	46.65
VIT_08s0007g03760.t01	Wine grape	nucleus	32.9	42.75
Solyc09g009200.1.1	Tomato	nucleus	29.37	41.47
Solyc10g083510.1.1	Tomato	nucleus	28.62	39.59
PGSC0003DMT400072628	Potato	nucleus	28.25	38.87
GSMUA_Achr3P22790_001	Banana	nucleus	27.32	37.5
GSMUA_Achr8P07650_001	Banana	extracellular	21.56	36.71
Bra022667.1-P	Field mustard	nucleus	16.17	25.07
Bra017851.1-P	Field mustard	nucleus	17.1	20.58
Bra019244.1-P	Field mustard	nucleus	13.94	20.0
Bra013767.1-P	Field mustard	nucleus	13.75	19.95
Bra001532.1-P	Field mustard	nucleus	13.2	19.56
Bra011781.1-P	Field mustard	nucleus	16.17	19.29
Bra027384.1-P	Field mustard	nucleus	13.94	19.18
Bra000575.1-P	Field mustard	nucleus	18.03	18.73
Bra015184.1-P	Field mustard	nucleus	13.01	17.5
Bra039334.1-P	Field mustard	nucleus	12.83	16.2
Bra021521.1-P	Field mustard	cytosol	11.9	15.57

Protein Annotations

MapMan:15.5.52.1	Gene3D:3.30.420.140	EnsemblPlantsGene:Bra019640	EnsemblPlants:Bra019640.1	EnsemblPlants:Bra019640.1-P	ncoils:Coil
GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351	GO:GO:0006355	GO:GO:0006364
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0032502	InterPro:GRF
InterPro:Gln-Leu-Gln_QLQ	InterPro:IPR014977	InterPro:IPR014978	InterPro:IPR037027	UniProt:M4DSZ7	HAMAP:MF_00651
PFAM:PF03652	PFAM:PF08879	PFAM:PF08880	PFscan:PS51666	PFscan:PS51667	PANTHER:PTHR31602
PANTHER:PTHR31602:SF39	InterPro:RNaseH-like_sf	SMART:SM00732	SMART:SM00951	SUPFAM:SSF53098	TIGRFAMs:TIGR00250
UniParc:UPI000253E73C	InterPro:WRC_dom	InterPro:YqgF	InterPro:YqgF/RNaseH-like_dom	InterPro:YqgF/RNaseH-like_dom_sf	SEG:seg

Description

AT3G52910 (E=4e-113) AtGRF4 | AtGRF4 (GROWTH-REGULATING FACTOR 4); transcription activator

Coordinates

chrA06:-:5345136..5349774

Molecular Weight (calculated)

60819.8 Da

IEP (calculated)

8.220

GRAVY (calculated)

-0.612

Length

538 amino acids

Sequence
(BLAST)

001: MDLQLKQWRI QQQNESEEQS YATKMSKSFS HQIQSQTATS ATALPLFVPE PTTSSSFSCF SPDSSSSRLL KMGNLFSLAQ WQELELQALI YRYMLAGASV
101: PQELLLPIKK SLFHQSHLNF LHYPLQHNFP HHQPWYWGRG AVDPEPGRCK RTDGKKWRCS RDVVASYKYC DRHIHRGRNR SRKPVETTTN AATNAASSFA
201: LGEKLGQGPD NLFFSSSSSH SSTQHLHLNS HQSCSSEMKQ ESNNKKRPYE AHNNGRTNDG HILRHFFEDW PQSSDSTSRP MSSSTCHHSI SMPSYASSDV
301: SLKLSTCNEE EEANMINNNN NEKEHQQNMN CLSSGGNDYN MDGPLAEALR SASPTSSLLQ QMGISTQEMK YVKPLRLLGD ALKTKVSVPG RFLGLDVGDK
401: YVGLAVSDPS NMIASPLSVL LRKKTNIDLM ATDFQNLVKS FSVSGLVVGY PFGKLNNVED VVIVNLFIEE LRKTEKLKDV KYTYWDERLS SKTVELMLKP
501: LKLHPVQEKT MLDKFAAVVI LQEYLDYANR YVKTEPEE

Best Arabidopsis Sequence Match ( AT3G52910.1 )
(BLAST)

001: MDLQLKQWRS QQQNESEEQG SAATKISNFF FDQIQSQTAT SAAAAPLPLF VPEPTSSSSF SCFSPDSSNS SSSSRFLKMG NFFSWAQWQE LELQALIYRY
101: MLAGASVPQE LLLPIKKSLL HQSPMHFLHH PLQHSFPHHQ PSWYWGRGAM DPEPGRCKRT DGKKWRCSRD VVAGHKYCDR HIHRGRNRSR KPVETATTTI
201: TTTATTTASS FVLGEELGHG PNNNHFFSSG SSQPLHLSHQ QSCSSEMKQE SNNNKRPYEA NSGFSNGRSD DGHILRHFFD DWPRSSDSTS SPMSSSTCHL
301: SISMPGNNTS SDVSLKLSTG NEEEEENMRN NNNEREQMNW WSNGGNHHNN MGGPLAEALR SASSTSSVLH QMGISTQVFH

Arabidopsis Description

GRF4Growth-regulating factor 4 [Source:UniProtKB/Swiss-Prot;Acc:Q8L8A7]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.