Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G52910.1 | CDX86202 | AT5G28640.1 | 15960617 |
| AT3G52910.1 | CDY00027 | AT5G28640.1 | 15960617 |
| AT3G52910.1 | CDY05600 | AT5G28640.1 | 15960617 |
| AT3G52910.1 | CDY33883 | AT5G28640.1 | 15960617 |
| AT3G52910.1 | CDY57020 | AT5G28640.1 | 15960617 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX78132 | Canola | nucleus | 73.84 | 80.11 |
| CDX73595 | Canola | nucleus | 74.33 | 79.79 |
| CDX67545 | Canola | nucleus | 70.17 | 78.85 |
| CDY13333 | Canola | nucleus | 70.42 | 78.69 |
| AT3G52910.1 | Thale cress | nucleus | 71.64 | 77.11 |
| Bra019640.1-P | Field mustard | nucleus | 92.18 | 70.07 |
| CDY66284 | Canola | nucleus | 86.31 | 65.61 |
| CDX84560 | Canola | nucleus | 57.21 | 63.59 |
| CDX79674 | Canola | nucleus | 56.48 | 62.77 |
| CDY43721 | Canola | nucleus | 53.79 | 61.97 |
| CDX75039 | Canola | nucleus | 57.95 | 61.56 |
| CDX84126 | Canola | nucleus | 58.44 | 60.97 |
| KRH30830 | Soybean | nucleus | 40.59 | 49.55 |
| KRH32671 | Soybean | nucleus | 40.59 | 49.4 |
| KRH67865 | Soybean | nucleus | 44.5 | 47.4 |
| KRG96154 | Soybean | nucleus | 44.5 | 46.91 |
| VIT_08s0007g03760.t01 | Wine grape | nucleus | 44.01 | 43.48 |
| Solyc09g009200.1.1 | Tomato | nucleus | 38.63 | 41.47 |
| Solyc10g083510.1.1 | Tomato | nucleus | 37.9 | 39.85 |
| PGSC0003DMT400072628 | Potato | nucleus | 37.41 | 39.13 |
| GSMUA_Achr3P22790_001 | Banana | nucleus | 36.19 | 37.76 |
| GSMUA_Achr8P07650_001 | Banana | extracellular | 28.61 | 37.03 |
| CDY55116 | Canola | nucleus | 19.56 | 28.37 |
| CDY51791 | Canola | nucleus | 21.52 | 26.91 |
| CDY66422 | Canola | nucleus | 19.56 | 25.56 |
| CDY28823 | Canola | nucleus | 21.27 | 25.07 |
| CDY70432 | Canola | nucleus | 14.18 | 23.87 |
| CDX83200 | Canola | nucleus | 21.27 | 22.08 |
| CDY29584 | Canola | nucleus | 21.76 | 21.81 |
| CDY72447 | Canola | nucleus, plastid | 18.09 | 21.51 |
| CDY03485 | Canola | nucleus | 18.09 | 21.26 |
| CDX72654 | Canola | nucleus | 22.25 | 20.59 |
| CDY10989 | Canola | nucleus | 18.58 | 20.21 |
| CDX82503 | Canola | nucleus | 17.6 | 19.67 |
| CDX75672 | Canola | nucleus | 21.52 | 19.51 |
| CDY55209 | Canola | nucleus | 18.58 | 19.49 |
| CDX92617 | Canola | nucleus | 19.32 | 19.41 |
| CDX97531 | Canola | nucleus | 18.34 | 19.33 |
| CDX69322 | Canola | nucleus | 21.76 | 19.31 |
| CDY39081 | Canola | nucleus | 18.58 | 19.1 |
| CDX75742 | Canola | nucleus | 16.87 | 18.9 |
| CDX71979 | Canola | nucleus | 17.6 | 18.7 |
| CDY33407 | Canola | nucleus | 17.11 | 17.5 |
| CDY21475 | Canola | nucleus | 20.78 | 17.1 |
| CDY37044 | Canola | nucleus | 17.11 | 16.02 |
| CDY27382 | Canola | nucleus | 17.11 | 15.77 |
| CDX76250 | Canola | cytosol, golgi, mitochondrion, nucleus | 2.44 | 5.88 |
Protein Annotations
| MapMan:15.5.52.1 | GO:A0A078CJM8 | EnsemblPlants:CDX76249 | ProteinID:CDX76249 | ProteinID:CDX76249.1 | ncoils:Coil |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0032502 | InterPro:GRF | EnsemblPlantsGene:GSBRNA2T00126587001 |
| InterPro:Gln-Leu-Gln_QLQ | InterPro:IPR014977 | InterPro:IPR014978 | PFAM:PF08879 | PFAM:PF08880 | PFscan:PS51666 |
| PFscan:PS51667 | PANTHER:PTHR31602 | PANTHER:PTHR31602:SF39 | SMART:SM00951 | UniParc:UPI0004EF304C | InterPro:WRC_dom |
| SEG:seg | : | : | : | : | : |
Description
BnaA04g05130D
Coordinates
chrLK031806:+:2143337..2146137
Molecular Weight (calculated)
46350.9 Da
IEP (calculated)
8.562
GRAVY (calculated)
-0.808
Length
409 amino acids
Sequence
(BLAST)
(BLAST)
001: MDLQLKQWRI QQQNESEEQS YATKMSKSFS HQIQSQTATS ATALPLFVPE PTTSSSFSCF SPDSSSSRLL KMGNLFSLAQ WQELELQALI YRYMLAGASV
101: PQELLLPIKK SLFHQSHLNF LHYPLQHNFP HHQPWYWGRG AVDPEPGRCK RTDGKKWRCS RDVVASYKYC DRHIHRGRNR SRKPVETTTN AATNAASSFA
201: LGEKLGQGPD NLFFSSSSSH SSTQHLHLNS HQSCSSEMKQ ESNNKKRPYE AHNNGRTNDG HILRHFFEDW PQSSDSTSRP MSSSTCHHSI SMPSYASSDV
301: SLKLSTCNEE EEANMINNNN NEKEHQQNMN CLSSGGNDYN MDGPLAEALR SASPTSSLLQ QMGISTQIFQ VQFDSVGFLK KLQFSVRFDN RLLQFSSLKN
401: PNRTNQLSN
101: PQELLLPIKK SLFHQSHLNF LHYPLQHNFP HHQPWYWGRG AVDPEPGRCK RTDGKKWRCS RDVVASYKYC DRHIHRGRNR SRKPVETTTN AATNAASSFA
201: LGEKLGQGPD NLFFSSSSSH SSTQHLHLNS HQSCSSEMKQ ESNNKKRPYE AHNNGRTNDG HILRHFFEDW PQSSDSTSRP MSSSTCHHSI SMPSYASSDV
301: SLKLSTCNEE EEANMINNNN NEKEHQQNMN CLSSGGNDYN MDGPLAEALR SASPTSSLLQ QMGISTQIFQ VQFDSVGFLK KLQFSVRFDN RLLQFSSLKN
401: PNRTNQLSN
001: MDLQLKQWRS QQQNESEEQG SAATKISNFF FDQIQSQTAT SAAAAPLPLF VPEPTSSSSF SCFSPDSSNS SSSSRFLKMG NFFSWAQWQE LELQALIYRY
101: MLAGASVPQE LLLPIKKSLL HQSPMHFLHH PLQHSFPHHQ PSWYWGRGAM DPEPGRCKRT DGKKWRCSRD VVAGHKYCDR HIHRGRNRSR KPVETATTTI
201: TTTATTTASS FVLGEELGHG PNNNHFFSSG SSQPLHLSHQ QSCSSEMKQE SNNNKRPYEA NSGFSNGRSD DGHILRHFFD DWPRSSDSTS SPMSSSTCHL
301: SISMPGNNTS SDVSLKLSTG NEEEEENMRN NNNEREQMNW WSNGGNHHNN MGGPLAEALR SASSTSSVLH QMGISTQVFH
101: MLAGASVPQE LLLPIKKSLL HQSPMHFLHH PLQHSFPHHQ PSWYWGRGAM DPEPGRCKRT DGKKWRCSRD VVAGHKYCDR HIHRGRNRSR KPVETATTTI
201: TTTATTTASS FVLGEELGHG PNNNHFFSSG SSQPLHLSHQ QSCSSEMKQE SNNNKRPYEA NSGFSNGRSD DGHILRHFFD DWPRSSDSTS SPMSSSTCHL
301: SISMPGNNTS SDVSLKLSTG NEEEEENMRN NNNEREQMNW WSNGGNHHNN MGGPLAEALR SASSTSSVLH QMGISTQVFH
Arabidopsis Description
GRF4Growth-regulating factor 4 [Source:UniProtKB/Swiss-Prot;Acc:Q8L8A7]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.