Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 4
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT3G13960.1 | CDX86202 | AT5G28640.1 | 15960617 |
| AT3G13960.1 | CDY00027 | AT5G28640.1 | 15960617 |
| AT3G13960.1 | CDY05600 | AT5G28640.1 | 15960617 |
| AT3G13960.1 | CDY33883 | AT5G28640.1 | 15960617 |
| AT3G13960.1 | CDY57020 | AT5G28640.1 | 15960617 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX82503 | Canola | nucleus | 95.34 | 95.08 |
| CDY55209 | Canola | nucleus | 83.01 | 77.69 |
| CDX97531 | Canola | nucleus | 82.47 | 77.58 |
| AT3G13960.1 | Thale cress | nucleus | 80.82 | 74.31 |
| CDX71979 | Canola | nucleus | 77.53 | 73.51 |
| CDY39081 | Canola | nucleus | 78.08 | 71.61 |
| VIT_09s0002g01350.t01 | Wine grape | nucleus | 38.9 | 39.12 |
| KRH47599 | Soybean | nucleus | 36.71 | 38.84 |
| KRH06183 | Soybean | nucleus | 36.16 | 36.67 |
| Os06t0204800-00 | Rice | nucleus | 25.48 | 30.9 |
| TraesCS6A01G335900.1 | Wheat | nucleus | 33.7 | 30.07 |
| Zm00001d018260_P001 | Maize | mitochondrion | 30.96 | 30.05 |
| HORVU6Hr1G081210.1 | Barley | nucleus | 33.97 | 30.02 |
| TraesCS6B01G366700.1 | Wheat | nucleus | 33.7 | 30.0 |
| TraesCS6D01G315700.1 | Wheat | nucleus | 33.7 | 29.71 |
| Os02t0776900-01 | Rice | mitochondrion, nucleus | 32.05 | 29.47 |
| HORVU7Hr1G034610.4 | Barley | mitochondrion | 25.21 | 29.39 |
| PGSC0003DMT400033847 | Potato | nucleus | 21.64 | 29.26 |
| CDY70432 | Canola | nucleus | 19.45 | 29.22 |
| OQU76020 | Sorghum | mitochondrion, nucleus | 26.58 | 28.7 |
| TraesCS7A01G165600.1 | Wheat | nucleus | 23.84 | 28.16 |
| KXG31209 | Sorghum | mitochondrion, nucleus | 30.41 | 28.03 |
| TraesCS7B01G070200.1 | Wheat | nucleus | 24.11 | 27.85 |
| TraesCS7D01G166400.1 | Wheat | nucleus | 24.38 | 27.81 |
| Zm00001d052112_P001 | Maize | mitochondrion, nucleus | 29.59 | 26.93 |
| Zm00001d037117_P001 | Maize | mitochondrion, nucleus | 26.58 | 26.36 |
| Zm00001d000238_P001 | Maize | nucleus | 26.58 | 24.74 |
| CDY55116 | Canola | nucleus | 18.08 | 23.4 |
| CDY66422 | Canola | nucleus | 18.63 | 21.73 |
| CDY51791 | Canola | nucleus | 18.9 | 21.1 |
| CDY33407 | Canola | nucleus | 22.47 | 20.5 |
| CDY28823 | Canola | nucleus | 19.45 | 20.46 |
| CDX84126 | Canola | nucleus | 21.64 | 20.15 |
| CDX75039 | Canola | nucleus | 20.82 | 19.74 |
| CDX83200 | Canola | nucleus | 21.1 | 19.54 |
| CDX78132 | Canola | nucleus | 19.45 | 18.83 |
| CDX84560 | Canola | nucleus | 18.9 | 18.75 |
| CDX73595 | Canola | nucleus | 19.45 | 18.64 |
| CDY13333 | Canola | nucleus | 18.63 | 18.58 |
| CDX79674 | Canola | nucleus | 18.63 | 18.48 |
| CDX67545 | Canola | nucleus | 18.36 | 18.41 |
| CDY43721 | Canola | nucleus | 17.53 | 18.03 |
| CDY37044 | Canola | nucleus | 20.27 | 16.93 |
| CDY29584 | Canola | nucleus | 18.9 | 16.91 |
| CDX76249 | Canola | nucleus | 18.9 | 16.87 |
| CDY27382 | Canola | nucleus | 20.27 | 16.67 |
| CDY21475 | Canola | nucleus | 21.64 | 15.9 |
| CDX72654 | Canola | nucleus | 19.18 | 15.84 |
| CDY10989 | Canola | nucleus | 15.62 | 15.16 |
| CDY72447 | Canola | nucleus, plastid | 14.25 | 15.12 |
| CDX75672 | Canola | nucleus | 18.63 | 15.08 |
| CDY03485 | Canola | nucleus | 14.25 | 14.94 |
| CDX69322 | Canola | nucleus | 18.63 | 14.75 |
| CDX92617 | Canola | nucleus | 15.62 | 14.0 |
| CDY66284 | Canola | nucleus | 18.9 | 12.83 |
| CDX76250 | Canola | cytosol, golgi, mitochondrion, nucleus | 0.0 | 0.0 |
Protein Annotations
| MapMan:15.5.52.1 | GO:A0A078CG27 | EnsemblPlants:CDX75742 | ProteinID:CDX75742 | ProteinID:CDX75742.1 | GO:GO:0000166 |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005524 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005634 | GO:GO:0006139 | GO:GO:0006351 | GO:GO:0006355 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0032502 | InterPro:GRF | EnsemblPlantsGene:GSBRNA2T00123666001 | InterPro:Gln-Leu-Gln_QLQ |
| InterPro:IPR014977 | InterPro:IPR014978 | PFAM:PF08879 | PFAM:PF08880 | PFscan:PS51666 | PFscan:PS51667 |
| PANTHER:PTHR31602 | PANTHER:PTHR31602:SF38 | SMART:SM00951 | UniParc:UPI0004EF1176 | InterPro:WRC_dom | SEG:seg |
Description
BnaC03g38250D
Coordinates
chrLK031805:+:304294..306973
Molecular Weight (calculated)
41507.8 Da
IEP (calculated)
8.746
GRAVY (calculated)
-0.978
Length
365 amino acids
Sequence
(BLAST)
(BLAST)
001: MMNLSGTSGR TIDRPPFTPT QWQEMEHQAL IYKYMVSGVP VAPELIFSIR RSLDSSLVSR LLPHQSIGWG CYQMGLGRKP DPEPGRCRRT DGKKWRCSRE
101: AHPDSKYCEK HMHRGRNRAK KALDQNQTTA PSTSPSLSFP NKDNPISPTL SSSSSSFIDT YSRFGVGSRN SRGYFNNHSL DYPYPSSCSP KQQQTLEHAS
201: ALSLHQNTST SQFNVLASET DHKDFRHFQG IGERTFFPEA SKSFQESPYH HQEALATALN DPYHGSSSDH HHTYSSSSSR HRDYHQQQQH FVLGADEFNK
301: STRTVFSNTS RQGHQEEEKD SPKIKKSLHH FFGEDWAQIK NASDSWLDLS SQSRLDTGNL LSYMC
101: AHPDSKYCEK HMHRGRNRAK KALDQNQTTA PSTSPSLSFP NKDNPISPTL SSSSSSFIDT YSRFGVGSRN SRGYFNNHSL DYPYPSSCSP KQQQTLEHAS
201: ALSLHQNTST SQFNVLASET DHKDFRHFQG IGERTFFPEA SKSFQESPYH HQEALATALN DPYHGSSSDH HHTYSSSSSR HRDYHQQQQH FVLGADEFNK
301: STRTVFSNTS RQGHQEEEKD SPKIKKSLHH FFGEDWAQIK NASDSWLDLS SQSRLDTGNL LSYMC
001: MMSLSGSSGR TIGRPPFTPT QWEELEHQAL IYKYMVSGVP VPPELIFSIR RSLDTSLVSR LLPHQSLGWG CYQMGFGRKP DPEPGRCRRT DGKKWRCSRE
101: AYPDSKYCEK HMHRGRNRAR KSLDQNQTTT TPLTSPSLSF TNNNNPSPTL SSSSSSNSSS TTYSASSSSM DAYSNSNRFG LGGSSSNTRG YFNSHSLDYP
201: YPSTSPKQQQ QTLHHASALS LHQNTNSTSQ FNVLASATDH KDFRYFQGIG ERVGGVGERT FFPEASRSFQ DSPYHHHQQP LATVMNDPYH HCSTDHNKID
301: HHHTYSSSSS SQHLHHDHDH RQQQCFVLGA DMFNKPTRSV LANSSRQDQN QEEDEKDSSE SSKKSLHHFF GEDWAQNKNS SDSWLDLSSH SRLDTGS
101: AYPDSKYCEK HMHRGRNRAR KSLDQNQTTT TPLTSPSLSF TNNNNPSPTL SSSSSSNSSS TTYSASSSSM DAYSNSNRFG LGGSSSNTRG YFNSHSLDYP
201: YPSTSPKQQQ QTLHHASALS LHQNTNSTSQ FNVLASATDH KDFRYFQGIG ERVGGVGERT FFPEASRSFQ DSPYHHHQQP LATVMNDPYH HCSTDHNKID
301: HHHTYSSSSS SQHLHHDHDH RQQQCFVLGA DMFNKPTRSV LANSSRQDQN QEEDEKDSSE SSKKSLHHFF GEDWAQNKNS SDSWLDLSSH SRLDTGS
Arabidopsis Description
GRF5Growth-regulating factor 5 [Source:UniProtKB/Swiss-Prot;Acc:Q8L8A6]
SUBAcon: [nucleus]
SUBAcon: [nucleus]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.