Factsheet for Os02t0776900-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 4
plastid 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Os03t0733600-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13960.1	Os03t0733600-01	AT5G28640.1	15960617

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6A01G335900.1	Wheat	nucleus	78.84	76.53
TraesCS6B01G366700.1	Wheat	nucleus	78.84	76.34
HORVU6Hr1G081210.1	Barley	nucleus	79.35	76.27
TraesCS6D01G315700.1	Wheat	nucleus	79.35	76.09
KXG31209	Sorghum	mitochondrion, nucleus	75.31	75.51
Zm00001d018260_P001	Maize	mitochondrion	67.51	71.28
Zm00001d052112_P001	Maize	mitochondrion, nucleus	68.77	68.08
Os06t0204800-00	Rice	nucleus	40.3	53.16
VIT_09s0002g01350.t01	Wine grape	nucleus	40.55	44.35
KRH12524	Soybean	nucleus	38.04	41.37
KRH37478	Soybean	nucleus	37.78	41.1
KRH47599	Soybean	nucleus	35.26	40.58
Solyc07g041640.2.1	Tomato	nucleus	34.26	39.53
GSMUA_Achr8P30640_001	Banana	nucleus	31.49	39.06
KRH06183	Soybean	nucleus	35.26	38.89
KRH02627	Soybean	nucleus	36.78	38.73
KRH19281	Soybean	nucleus	37.03	38.28
VIT_11s0016g01250.t01	Wine grape	nucleus	37.28	38.24
PGSC0003DMT400033847	Potato	nucleus	23.93	35.19
GSMUA_Achr7P02330_001	Banana	nucleus	29.97	34.59
CDX71979	Canola	nucleus	33.25	34.29
CDY39081	Canola	nucleus	34.26	34.17
Bra001532.1-P	Field mustard	nucleus	30.98	33.88
CDY55209	Canola	nucleus	32.49	33.08
Os04t0600900-02	Rice	plastid	31.99	33.07
CDX97531	Canola	nucleus	32.24	32.99
CDX82503	Canola	nucleus	30.23	32.79
AT3G13960.1	Thale cress	nucleus	32.49	32.49
GSMUA_Achr1P21940_001	Banana	nucleus	30.73	32.19
CDX75742	Canola	nucleus	29.47	32.05
Os02t0701300-01	Rice	nucleus, plastid	31.74	31.98
Bra027384.1-P	Field mustard	nucleus	31.49	31.97
Bra021521.1-P	Field mustard	cytosol	28.97	27.98
Os02t0678800-01	Rice	nucleus	14.86	27.96
Os04t0574500-01	Rice	cytosol, mitochondrion, nucleus, plastid	15.11	25.42
Os07t0467500-01	Rice	nucleus	14.36	21.19
Os03t0729500-01	Rice	nucleus	23.68	20.61
Os03t0674700-01	Rice	nucleus	21.41	19.95
Os11t0551900-01	Rice	nucleus	7.81	19.87
Os12t0484900-01	Rice	nucleus, plastid	19.9	19.13

Protein Annotations

MapMan:15.5.52.1	EntrezGene:4330903	ProteinID:BAD16965.1	ProteinID:BAD17386.1	ProteinID:BAF10202.1	ProteinID:BAS81176.1
ProteinID:DAA05205.1	ProteinID:EAZ24805.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139	GO:GO:0006351
GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009628	GO:GO:0009719
GO:GO:0009739	GO:GO:0009987	GO:GO:0030912	GO:GO:0032502	InterPro:GRF	InterPro:Gln-Leu-Gln_QLQ
InterPro:IPR014977	InterPro:IPR014978	EnsemblPlantsGene:Os02g0776900	EnsemblPlants:Os02t0776900-01	PFAM:PF08879	PFAM:PF08880
PFscan:PS51666	PFscan:PS51667	PANTHER:PTHR31602	PANTHER:PTHR31602:SF23	UniProt:Q6AWY8	SMART:SM00951
UniParc:UPI000042AEEE	InterPro:WRC_dom	RefSeq:XP_015624121.1	SEG:seg	:	:

Description

GROWTH-REGULATING FACTOR 1Transcription activator, Gibberellin (GA)-induced stem elongation (Os02t0776900-01);Similar to Growth-regulating factor 1. (Os02t0776900-02)

Coordinates

chr2:-:32840368..32842456

Molecular Weight (calculated)

43567.7 Da

IEP (calculated)

7.598

GRAVY (calculated)

-0.817

Length

397 amino acids

Sequence
(BLAST)

001: MMMMSGRPSG GAGGGRYPFT ASQWQELEHQ ALIYKYMASG TPIPSDLILP LRRSFLLDSA LATSPSLAFP PQPSLGWGCF GMGFGRKAED PEPGRCRRTD
101: GKKWRCSKEA YPDSKYCEKH MHRGKNRSRK PVEMSLATPP PPSSSATSAA SNTSAGVAPT TTTTSSPAPS YSRPAPHDAA PYQALYGGPY AAATARTPAA
201: AAYHAQVSPF HLQLDTTHPH PPPSYYSMDH KEYAYGHATK EVHGEHAFFS DGTEREHHHA AAGHGQWQFK QLGMEPKQST TPLFPGAGYG HTAASPYAID
301: LSKEDDDEKE RRQQQQQQQQ QHCFLLGADL RLEKPAGHDH AAAAQKPLRH FFDEWPHEKN SKGSWMGLEG ETQLSMSIPM AANDLPITTT SRYHNDD

Best Arabidopsis Sequence Match ( AT3G13960.1 )
(BLAST)

001: MMSLSGSSGR TIGRPPFTPT QWEELEHQAL IYKYMVSGVP VPPELIFSIR RSLDTSLVSR LLPHQSLGWG CYQMGFGRKP DPEPGRCRRT DGKKWRCSRE
101: AYPDSKYCEK HMHRGRNRAR KSLDQNQTTT TPLTSPSLSF TNNNNPSPTL SSSSSSNSSS TTYSASSSSM DAYSNSNRFG LGGSSSNTRG YFNSHSLDYP
201: YPSTSPKQQQ QTLHHASALS LHQNTNSTSQ FNVLASATDH KDFRYFQGIG ERVGGVGERT FFPEASRSFQ DSPYHHHQQP LATVMNDPYH HCSTDHNKID
301: HHHTYSSSSS SQHLHHDHDH RQQQCFVLGA DMFNKPTRSV LANSSRQDQN QEEDEKDSSE SSKKSLHHFF GEDWAQNKNS SDSWLDLSSH SRLDTGS

Arabidopsis Description

GRF5Growth-regulating factor 5 [Source:UniProtKB/Swiss-Prot;Acc:Q8L8A6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.