CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus

Predictor Summary:

nucleus 3
mitochondrion 4
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER90925

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT3G13960.1	EER90925	AT5G28640.1	15960617

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d052112_P001	Maize	mitochondrion, nucleus	84.6	83.54
Zm00001d018260_P001	Maize	mitochondrion	75.0	78.99
Os02t0776900-01	Rice	mitochondrion, nucleus	75.51	75.31
HORVU6Hr1G081210.1	Barley	nucleus	71.97	69.01
TraesCS6A01G335900.1	Wheat	nucleus	71.21	68.95
TraesCS6B01G366700.1	Wheat	nucleus	71.21	68.78
TraesCS6D01G315700.1	Wheat	nucleus	71.46	68.36
OQU76020	Sorghum	mitochondrion, nucleus	39.9	46.75
VIT_09s0002g01350.t01	Wine grape	nucleus	38.64	42.15
KRH47599	Soybean	nucleus	33.33	38.26
GSMUA_Achr8P30640_001	Banana	nucleus	30.56	37.81
KRH12524	Soybean	nucleus	34.85	37.81
KRH37478	Soybean	nucleus	34.6	37.53
Solyc07g041640.2.1	Tomato	nucleus	32.58	37.5
VIT_11s0016g01250.t01	Wine grape	nucleus	36.11	36.95
KRH06183	Soybean	nucleus	33.59	36.94
KRH02627	Soybean	nucleus	33.84	35.54
KRH19281	Soybean	nucleus	33.84	34.9
PGSC0003DMT400033847	Potato	nucleus	22.98	33.7
CDX71979	Canola	nucleus	31.82	32.73
CDY39081	Canola	nucleus	32.58	32.41
GSMUA_Achr7P02330_001	Banana	nucleus	27.78	31.98
Bra001532.1-P	Field mustard	nucleus	29.04	31.68
EES12787	Sorghum	nucleus	30.05	31.48
CDY55209	Canola	nucleus	30.81	31.28
AT3G13960.1	Thale cress	nucleus	31.31	31.23
CDX97531	Canola	nucleus	30.56	31.19
CDX82503	Canola	nucleus	28.54	30.87
GSMUA_Achr1P21940_001	Banana	nucleus	29.55	30.87
Bra027384.1-P	Field mustard	nucleus	30.05	30.43
CDX75742	Canola	nucleus	28.03	30.41
EER89089	Sorghum	cytosol, mitochondrion, nucleus	23.99	29.78
OQU85555	Sorghum	plastid	29.8	27.0
Bra021521.1-P	Field mustard	cytosol	27.78	26.76
KXG28671	Sorghum	nucleus	18.94	20.22
EER99361	Sorghum	nucleus	13.13	19.19
EER93679	Sorghum	nucleus	19.95	18.16
EER90936	Sorghum	nucleus	26.52	17.47

Protein Annotations

MapMan:15.5.52.1	EntrezGene:8081935	UniProt:A0A194YSJ1	GO:GO:0000166	GO:GO:0003674	GO:GO:0005488
GO:GO:0005524	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0006139
GO:GO:0006351	GO:GO:0006355	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009628
GO:GO:0009719	GO:GO:0009739	GO:GO:0009987	GO:GO:0030912	GO:GO:0032502	InterPro:GRF
InterPro:Gln-Leu-Gln_QLQ	InterPro:IPR014977	InterPro:IPR014978	EnsemblPlants:KXG31209	ProteinID:KXG31209	ProteinID:KXG31209.1
PFAM:PF08879	PFAM:PF08880	PFscan:PS51666	PFscan:PS51667	PANTHER:PTHR31602	PANTHER:PTHR31602:SF23
SMART:SM00951	EnsemblPlantsGene:SORBI_3004G317000	unigene:Sbi.4254	UniParc:UPI0007F1CE54	InterPro:WRC_dom	SEG:seg

Description

hypothetical protein

Coordinates

chr4:-:65267342..65268752

Molecular Weight (calculated)

42887.9 Da

IEP (calculated)

8.355

GRAVY (calculated)

-0.739

Length

396 amino acids

Sequence
(BLAST)

001: MMMMSGRAGG GATAGRYPFT ASQWQELEHQ ALIYKCLASG KPIPSYLMPP LRRILDSALA TSPSLAFPPQ PSLGWGCFGM GFSRKPDEDP EPGRCRRTDG
101: KKWRCSKEAY PDSKYCEKHM HRGKNRSRKP VEMSLATPAP ASAVSSATSA TAAAAAATTT TSSPAPSYRP APTSHDASPY HALYGGGSPY SASARPAGGP
201: GPYHHPAQVS PFHLHLETTH PHPPPSYYSV DQRDYAYGHA TKEVVGEHAF FSDGAAERDR QHAAGQWQFK QLGMDTKPSP TSLFPVAGYG NGAGASPYGV
301: DLGAKEDDEE ERRRQQQQHC FVLGADLRLE RPSSGHDAAT AQKPLRPFFD EWPHEKGNKG GSWMGLDGET QLSMSIPMAA SDLPVTSRYR NGAHYE

Best Arabidopsis Sequence Match ( AT3G13960.1 )
(BLAST)

001: MMSLSGSSGR TIGRPPFTPT QWEELEHQAL IYKYMVSGVP VPPELIFSIR RSLDTSLVSR LLPHQSLGWG CYQMGFGRKP DPEPGRCRRT DGKKWRCSRE
101: AYPDSKYCEK HMHRGRNRAR KSLDQNQTTT TPLTSPSLSF TNNNNPSPTL SSSSSSNSSS TTYSASSSSM DAYSNSNRFG LGGSSSNTRG YFNSHSLDYP
201: YPSTSPKQQQ QTLHHASALS LHQNTNSTSQ FNVLASATDH KDFRYFQGIG ERVGGVGERT FFPEASRSFQ DSPYHHHQQP LATVMNDPYH HCSTDHNKID
301: HHHTYSSSSS SQHLHHDHDH RQQQCFVLGA DMFNKPTRSV LANSSRQDQN QEEDEKDSSE SSKKSLHHFF GEDWAQNKNS SDSWLDLSSH SRLDTGS

Arabidopsis Description

GRF5Growth-regulating factor 5 [Source:UniProtKB/Swiss-Prot;Acc:Q8L8A6]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.