CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER90936
EER93679
KXG28671
KXG31209
OQU76020

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G28640.1	EER90936	AT2G22840.1	15326298
AT5G28640.1	EER93679	AT2G22840.1	15326298
AT5G28640.1	KXG28671	AT2G22840.1	15326298
AT5G28640.1	KXG31209	AT3G13960.1	15960617
AT5G28640.1	OQU76020	AT3G13960.1	15960617
AT5G28640.1	EER90936	AT4G37740.1	15326298
AT5G28640.1	EER93679	AT4G37740.1	15326298
AT5G28640.1	KXG28671	AT4G37740.1	15326298

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d033905_P001	Maize	nucleus	90.22	89.43
Os03t0733600-01	Rice	nucleus	77.33	76.65
TraesCS4A01G250600.1	Wheat	nucleus	74.22	73.89
TraesCS4D01G062900.1	Wheat	nucleus	71.56	71.56
TraesCS4B01G064000.1	Wheat	nucleus	71.56	71.56
HORVU4Hr1G010610.1	Barley	cytosol, mitochondrion, nucleus	76.0	69.51
GSMUA_Achr10P...	Banana	nucleus	53.33	56.07
GSMUA_Achr8P20680_001	Banana	nucleus	52.0	53.92
Bra036131.1-P	Field mustard	nucleus	46.67	51.72
CDY00027	Canola	nucleus	46.22	51.23
CDY57020	Canola	nucleus	46.22	51.23
AT5G28640.1	Thale cress	nucleus	47.56	50.95
Bra010002.1-P	Field mustard	nucleus	45.78	50.74
CDY05600	Canola	nucleus	46.22	50.49
GSMUA_Achr9P10760_001	Banana	cytosol	52.44	49.17
Bra020616.1-P	Field mustard	nucleus	44.44	49.02
CDY33883	Canola	nucleus	44.44	48.78
KRG92707	Soybean	nucleus	45.78	48.58
KRH34114	Soybean	nucleus	44.89	47.64
Solyc04g009820.2.1	Tomato	nucleus	44.0	47.6
VIT_14s0081g00200.t01	Wine grape	nucleus	46.67	47.09
PGSC0003DMT400065405	Potato	nucleus	43.56	45.79
PGSC0003DMT400002573	Potato	nucleus	45.33	45.74
KRG97010	Soybean	nucleus	42.67	45.71
Solyc11g006230.1.1	Tomato	nucleus	44.0	44.59
VIT_07s0005g02950.t01	Wine grape	nucleus	41.78	41.96
KRH68767	Soybean	cytosol	38.22	33.46
CDX86202	Canola	endoplasmic reticulum, extracellular	14.22	33.33
EES17040	Sorghum	cytosol	25.78	31.18
EES10114	Sorghum	cytosol, extracellular, nucleus	26.67	28.04

Protein Annotations

MapMan:15.5.52.2	EntrezGene:8059943	UniProt:C5WLX4	EnsemblPlants:EER90925	ProteinID:EER90925	ProteinID:EER90925.1
GO:GO:0000003	GO:GO:0003674	GO:GO:0003713	GO:GO:0006139	GO:GO:0007275	GO:GO:0008150
GO:GO:0008152	GO:GO:0008283	GO:GO:0009058	GO:GO:0009790	GO:GO:0009791	GO:GO:0009955
GO:GO:0009987	GO:GO:0048366	GO:GO:0048825	GO:GO:1903506	GO:GO:1903508	PFAM:PF05030
PANTHER:PTHR23107	PANTHER:PTHR23107:SF15	EnsemblPlantsGene:SORBI_3001G101700	InterPro:SS18_fam	UniParc:UPI0001A823F2	RefSeq:XP_002463927.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:7782002..7785807

Molecular Weight (calculated)

23470.7 Da

IEP (calculated)

5.498

GRAVY (calculated)

-0.489

Length

225 amino acids

Sequence
(BLAST)

001: MQQQHLMQMN QNMIGGYTSP AAVTTDLIQQ YLDENKQLIL AILDNQNNGK VEECERHQAK LQHNLMYLAA IADSQPPQTA PLSQYPSNLM MQPGPRYMPP
101: QSGQMMSPQS LMAARSSMMY AHPSMSPLQQ QQAAHGQLGM ASGGGGGTTS GFSILHGEAS MGGAAGAGTG NSMMNAGMFS GFGRSGSGAK EGSTSLSVDV
201: RGGTSSGAQS GDGEYLKAGT EEEGS

Best Arabidopsis Sequence Match ( AT5G28640.1 )
(BLAST)

001: MQQHLMQMQP MMAGYYPSNV TSDHIQQYLD ENKSLILKIV ESQNSGKLSE CAENQARLQR NLMYLAAIAD SQPQPPSVHS QYGSAGGGMI QGEGGSHYLQ
101: QQQATQQQQM TQQSLMAARS SMLYAQQQQQ QQPYATLQHQ QLHHSQLGMS SSSGGGGSSG LHILQGEAGG FHDFGRGKPE MGSGGGGEGR GGSSGDGGET
201: LYLKSSDDGN

Arabidopsis Description

GIF1GRF1-interacting factor 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8L8A5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.