CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 3
plastid 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d023767_P001	Maize	cytosol	91.94	93.96
Zm00001d041753_P001	Maize	cytosol, extracellular, nucleus	82.8	84.15
TraesCS5A01G107700.1	Wheat	cytosol	77.96	78.38
TraesCS5B01G114600.1	Wheat	cytosol	77.42	77.84
TraesCS5D01G116800.1	Wheat	cytosol	76.88	77.3
HORVU5Hr1G028870.1	Barley	cytosol	76.34	76.34
Os12t0496900-01	Rice	cytosol	69.89	70.27
EES10114	Sorghum	cytosol, extracellular, nucleus	65.05	56.54
GSMUA_Achr2P21910_001	Banana	cytosol	43.55	46.02
GSMUA_AchrUn_...	Banana	cytosol	49.46	45.1
KRH47827	Soybean	cytosol	51.61	45.07
GSMUA_Achr11P...	Banana	cytosol	52.69	44.34
KRH06396	Soybean	cytosol	50.0	44.29
VIT_15s0048g02770.t01	Wine grape	nucleus	49.46	41.44
Solyc10g009280.2.1	Tomato	nucleus	43.55	40.5
PGSC0003DMT400014095	Potato	cytosol, nucleus, vacuole	43.01	40.0
Bra032623.1-P	Field mustard	cytosol	41.94	38.42
CDY32441	Canola	cytosol	41.94	38.42
PGSC0003DMT400008338	Potato	cytosol, nucleus, plastid	40.32	38.07
AT4G00850.1	Thale cress	cytosol, extracellular, nucleus	44.62	37.22
CDY15196	Canola	nucleus	40.32	36.59
CDX90014	Canola	cytosol	40.32	36.41
Bra033281.1-P	Field mustard	nucleus	40.32	36.41
CDY37994	Canola	cytosol	37.63	35.9
Solyc03g082480.2.1	Tomato	nucleus	38.17	35.68
KRH44608	Soybean	cytosol	29.57	33.74
AT1G01160.2	Thale cress	cytosol, nucleus, vacuole	39.78	32.31
KRH53598	Soybean	nucleus	32.26	30.77
EER90925	Sorghum	nucleus	31.18	25.78
CDY62048	Canola	cytosol, plastid	11.83	18.97

Protein Annotations

EnsemblPlants:EES17040	EnsemblPlantsGene:SORBI_3008G100700	EntrezGene:8064085	GO:GO:0003674	GO:GO:0003713	GO:GO:0006139
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:1903506	GO:GO:1903508
InterPro:SS18_fam	PANTHER:PTHR23107	PANTHER:PTHR23107:SF8	PFAM:PF05030	ProteinID:EES17040	ProteinID:EES17040.1
RefSeq:XP_002443202.1	SEG:seg	UniParc:UPI0001A8845A	UniProt:C5YNU2	MapMan:15.5.52.2	:

Description

hypothetical protein

Coordinates

chr8:-:47695374..47702005

Molecular Weight (calculated)

19920.7 Da

IEP (calculated)

4.554

GRAVY (calculated)

-0.597

Length

186 amino acids

Sequence
(BLAST)

001: MQQPMPMQPQ APAMTPAAGI TTEQIQKYLD ENKQLILAIL ENQNLGKLAE CAQYQSQLQK NLLYLAAIAD AQPQTAVSRP QMAPPGALPG VGQYMSQVPM
101: FPPRTPLTPQ QMQEQQLQQQ QAQLLNFSGQ MVARPGMVNG MPQSIQAQQA QPSPALNKQD AGGVASEPSG TESHRSTGGD NDGGSD

Best Arabidopsis Sequence Match ( AT4G00850.1 )
(BLAST)

001: MQQSPQMIPM VLPSFPPTNN ITTEQIQKYL DENKKLIMAI LENQNLGKLA ECAQYQALLQ KNLMYLAAIA DAQPQPPAAT LTSGAMTPQA MAPNPSSMQP
101: PPSYFMQQHQ AVGMAQQIPP GIFPPRGPLQ FGSPHQFLDP QQQLHQQAMQ GHMGIRPMGL NNNNGLQHQM HHHETALAAN NAGPNDASGG GKPDGTNMSQ
201: SGADGQGGSA ARHGGGDAKT EGK

Arabidopsis Description

GIF3GRF1-interacting factor 3 [Source:UniProtKB/Swiss-Prot;Acc:Q93VH6]
SUBAcon: [extracellular,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.