Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 5
- cytosol 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400014095 | Potato | cytosol, nucleus, vacuole | 58.0 | 58.0 |
| VIT_15s0048g02770.t01 | Wine grape | nucleus | 60.0 | 54.05 |
| KRH47827 | Soybean | cytosol | 57.5 | 53.99 |
| KRH06396 | Soybean | cytosol | 56.0 | 53.33 |
| Zm00001d023767_P001 | Maize | cytosol | 40.0 | 43.96 |
| EES17040 | Sorghum | cytosol | 40.5 | 43.55 |
| TraesCS5B01G114600.1 | Wheat | cytosol | 39.5 | 42.7 |
| TraesCS5D01G116800.1 | Wheat | cytosol | 39.0 | 42.16 |
| Os12t0496900-01 | Rice | cytosol | 39.0 | 42.16 |
| TraesCS5A01G107700.1 | Wheat | cytosol | 39.0 | 42.16 |
| Zm00001d041753_P001 | Maize | cytosol, extracellular, nucleus | 38.0 | 41.53 |
| HORVU5Hr1G028870.1 | Barley | cytosol | 38.5 | 41.4 |
| Solyc03g082480.2.1 | Tomato | nucleus | 41.0 | 41.21 |
| TraesCS4B01G158300.1 | Wheat | cytosol | 40.0 | 41.03 |
| GSMUA_Achr2P21910_001 | Banana | cytosol | 34.5 | 39.2 |
| Os11t0615200-01 | Rice | extracellular | 40.0 | 39.02 |
| EES10114 | Sorghum | cytosol, extracellular, nucleus | 40.5 | 37.85 |
| TraesCS4A01G151200.1 | Wheat | cytosol | 37.5 | 37.5 |
| KRH44608 | Soybean | cytosol | 30.5 | 37.42 |
| Zm00001d048833_P001 | Maize | extracellular | 40.0 | 36.36 |
| GSMUA_Achr11P... | Banana | cytosol | 38.5 | 34.84 |
| GSMUA_AchrUn_... | Banana | cytosol | 35.0 | 34.31 |
| Solyc04g009820.2.1 | Tomato | nucleus | 33.0 | 31.73 |
| Solyc11g006230.1.1 | Tomato | nucleus | 30.0 | 27.03 |
Protein Annotations
| EnsemblPlants:Solyc10g009280.2.1 | EnsemblPlantsGene:Solyc10g009280.2 | GO:GO:0003674 | GO:GO:0003713 | GO:GO:0006139 | GO:GO:0008150 |
| GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:1903506 | GO:GO:1903508 | InterPro:SS18_fam |
| PANTHER:PTHR23107 | PANTHER:PTHR23107:SF14 | PFAM:PF05030 | SEG:seg | UniParc:UPI000276BDA0 | UniProt:K4CYA4 |
| MapMan:15.5.52.2 | : | : | : | : | : |
Description
No Description!
Coordinates
chr10:-:3267235..3271023
Molecular Weight (calculated)
21732.7 Da
IEP (calculated)
6.507
GRAVY (calculated)
-0.711
Length
200 amino acids
Sequence
(BLAST)
(BLAST)
001: MQQPPSMMPS FPSANITTEQ IQKYLDENKT LILAILDHQN LGKLAECAQY QAKLQKNLMY LAAIADAQPQ SPAIPTQMAP HPAMQQGGFY MQHPQAAAMT
101: QQQGMFTSKM PLQFNNPQQL HDQQQLQHQQ LQRQQQGMQL GGANSGMHSI LGVTSNVSQL TTSGAGDARG GNKQDNSETD PSGADGQASS VTAQVSEERK
101: QQQGMFTSKM PLQFNNPQQL HDQQQLQHQQ LQRQQQGMQL GGANSGMHSI LGVTSNVSQL TTSGAGDARG GNKQDNSETD PSGADGQASS VTAQVSEERK
001: MQQSPQMIPM VLPSFPPTNN ITTEQIQKYL DENKKLIMAI LENQNLGKLA ECAQYQALLQ KNLMYLAAIA DAQPQPPAAT LTSGAMTPQA MAPNPSSMQP
101: PPSYFMQQHQ AVGMAQQIPP GIFPPRGPLQ FGSPHQFLDP QQQLHQQAMQ GHMGIRPMGL NNNNGLQHQM HHHETALAAN NAGPNDASGG GKPDGTNMSQ
201: SGADGQGGSA ARHGGGDAKT EGK
101: PPSYFMQQHQ AVGMAQQIPP GIFPPRGPLQ FGSPHQFLDP QQQLHQQAMQ GHMGIRPMGL NNNNGLQHQM HHHETALAAN NAGPNDASGG GKPDGTNMSQ
201: SGADGQGGSA ARHGGGDAKT EGK
Arabidopsis Description
GIF3GRF1-interacting factor 3 [Source:UniProtKB/Swiss-Prot;Acc:Q93VH6]
SUBAcon: [extracellular,nucleus,cytosol]
SUBAcon: [extracellular,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.