Factsheet for Solyc11g006230.1.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g092070.2.1
Solyc09g009200.1.1
Solyc10g083510.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G28640.1	Solyc02g092070.2.1	AT2G22840.1	15326298
AT5G28640.1	Solyc09g009200.1.1	AT3G52910.1	15960617
AT5G28640.1	Solyc10g083510.1.1	AT3G52910.1	15960617
AT5G28640.1	Solyc02g092070.2.1	AT4G37740.1	15326298

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400002573	Potato	nucleus	93.69	93.27
Solyc04g009820.2.1	Tomato	nucleus	67.57	72.12
CDY05600	Canola	nucleus	63.51	68.45
Bra020616.1-P	Field mustard	nucleus	62.61	68.14
CDY33883	Canola	nucleus	62.61	67.8
KRG92707	Soybean	nucleus	63.96	66.98
KRH34114	Soybean	nucleus	63.06	66.04
AT5G28640.1	Thale cress	nucleus	62.16	65.71
Bra010002.1-P	Field mustard	nucleus	59.91	65.52
Bra036131.1-P	Field mustard	nucleus	59.91	65.52
CDY57020	Canola	nucleus	57.66	63.05
CDY00027	Canola	nucleus	57.66	63.05
KRG97010	Soybean	nucleus	58.11	61.43
GSMUA_Achr10P...	Banana	nucleus	50.9	52.8
VIT_07s0005g02950.t01	Wine grape	nucleus	51.35	50.89
GSMUA_Achr8P20680_001	Banana	nucleus	49.55	50.69
CDX86202	Canola	endoplasmic reticulum, extracellular	21.17	48.96
TraesCS4D01G062900.1	Wheat	nucleus	49.55	48.89
TraesCS4B01G064000.1	Wheat	nucleus	48.2	47.56
TraesCS4A01G250600.1	Wheat	nucleus	48.2	47.35
Os03t0733600-01	Rice	nucleus	47.3	46.26
EER90925	Sorghum	nucleus	44.59	44.0
GSMUA_Achr9P10760_001	Banana	cytosol	47.3	43.75
Zm00001d033905_P001	Maize	nucleus	42.79	41.85
KRH68767	Soybean	cytosol	48.2	41.63
HORVU4Hr1G010610.1	Barley	cytosol, mitochondrion, nucleus	45.95	41.46
Solyc03g082480.2.1	Tomato	nucleus	28.38	31.66
Solyc10g009280.2.1	Tomato	nucleus	27.03	30.0

Protein Annotations

EnsemblPlants:Solyc11g006230.1.1	EnsemblPlantsGene:Solyc11g006230.1	GO:GO:0003674	GO:GO:0003713	GO:GO:0006139	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:1903506	GO:GO:1903508	InterPro:SS18_fam
PANTHER:PTHR23107	PANTHER:PTHR23107:SF15	PFAM:PF05030	SEG:seg	UniParc:UPI0002769DBC	UniProt:K4D4N6
MapMan:15.5.52.2	:	:	:	:	:

Description

No Description!

Coordinates

chr11:-:981174..984561

Molecular Weight (calculated)

23581.5 Da

IEP (calculated)

6.410

GRAVY (calculated)

-0.685

Length

222 amino acids

Sequence
(BLAST)

001: MQQQHLMQMQ PMMAAYYPNN VTTDHIQQFL DENKSLILKI VESQNSGKIS ECAESQAKLQ RNLMYLAAIA DSQPQPPNMH SQLASGGMMQ GGAHYLQQQQ
101: AQQLTTQSLM ATTRSSSSML YGQQQQLSSL QQHQAAAYHS QQLGMSSSGG GSSGGLHMLQ SENTHSGSTG GGCFPDFGRG LGSANKLEMG GSMSDQGRGG
201: SSSGHGGDGG ENLYLKSSED GN

Best Arabidopsis Sequence Match ( AT5G28640.1 )
(BLAST)

001: MQQHLMQMQP MMAGYYPSNV TSDHIQQYLD ENKSLILKIV ESQNSGKLSE CAENQARLQR NLMYLAAIAD SQPQPPSVHS QYGSAGGGMI QGEGGSHYLQ
101: QQQATQQQQM TQQSLMAARS SMLYAQQQQQ QQPYATLQHQ QLHHSQLGMS SSSGGGGSSG LHILQGEAGG FHDFGRGKPE MGSGGGGEGR GGSSGDGGET
201: LYLKSSDDGN

Arabidopsis Description

GIF1GRF1-interacting factor 1 [Source:UniProtKB/Swiss-Prot;Acc:Q8L8A5]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.